RNA id: TU266779


Basic Information

Item Value
RNA id TU266779
length 413
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G235210
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9237407 ~ 9237874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGGACAGATAGACCAAAATGTACTTGAGTTCATTCTTTGTTGATTATTCCTCGTGTCAGTCGTGGTGAGTAAATAAAATTCCCAAACAGCTCCTTAAAAACAAAGGCCAGGCTTATGAAAAGTCATCCAGTATTGATATTCCATTCGGTTATTGTGTTCTCATCCCACTATCGCGTGGCCAAGTGAAGTTTGTGACCAGTCAGTTCATTACATGATGAACAAAGGAATACTCCACTCCCCCTTTGTGCTCAACTTTGAGACCAGACGCACCAAAACTCCCGCTAAAATATTACAAAATCTTTTACCTATATCAGGAAGCCATCCTCGAAGAGTTTTATTTAAAACATGTCAAAGTCCTCTGAGGCGTGATCCCGTTTTGTCGTTATAATCCAAAAGCGTTAAACTTTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266754 lncRNA downstream 14216 9211175 ~ 9215878 (-) True G235185
TU266751 lncRNA downstream 26941 9208018 ~ 9210521 (-) True G235183
TU266773 lncRNA downstream 37311 9199866 ~ 9200151 (-) True G235204
TU266771 lncRNA downstream 39584 9197480 ~ 9197878 (-) True G235202
TU266756 lncRNA downstream 79726 9157481 ~ 9157736 (-) True G235187
TU266789 lncRNA upstream 10763 9248637 ~ 9248863 (-) True G235217
TU266790 lncRNA upstream 11018 9248892 ~ 9249118 (-) True G235218
TU266791 lncRNA upstream 11310 9249184 ~ 9249419 (-) True G235219
TU266795 lncRNA upstream 23379 9261253 ~ 9261551 (-) True G235223
TU266796 lncRNA upstream 23719 9261593 ~ 9261803 (-) True G235224
CI01000054_09218869_09223868.mRNA mRNA downstream 13343 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09077309_09080163.mRNA mRNA downstream 156650 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_08953766_08966617.mRNA mRNA downstream 270845 8952134 ~ 8966617 (-) True CI01000054_08953766_08966617
CI01000054_08937312_08942587.mRNA mRNA downstream 294875 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
CI01000054_08721571_08723333.mRNA mRNA downstream 513380 8721008 ~ 8724082 (-) False CI01000054_08721571_08723333
CI01000054_09453616_09482480.mRNA mRNA upstream 214235 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
CI01000054_09483912_09484282.mRNA mRNA upstream 245938 9483812 ~ 9484282 (-) False CI01000054_09483912_09484282
CI01000054_09488559_09488870.mRNA mRNA upstream 250402 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09495785_09497239.mRNA mRNA upstream 257576 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09531778_09544007.mRNA mRNA upstream 293636 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
TU265381 other downstream 2065789 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 2583449 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 4028222 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 4565229 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 10165 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 245273 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 245478 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 245576 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 245610 9485215 ~ 9485318 (-) False G235290

Expression Profile