RNA id: TU266362


Basic Information

Item Value
RNA id TU266362
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G234805
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9340741 ~ 9340951 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGAACTCATGCAGACACAACAGGAACTAAACTAAACGGAACCATGATACAGGGATTCATAACTCACTTTTTTGTGGCTTCATGTCTTTGTCTTGTTTCTTTCTTTCACCTTTTCTGAAGTTGTCAATGGCACCAAATTAAATCACAATATTAGTGATTGTTTCTCATGTACTCCCTCTTCTTCTATTGTTCAATAAACAGGTAGTCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266313 lncRNA upstream 115266 9225254 ~ 9225475 (+) True G234756
TU266298 lncRNA upstream 127409 9211185 ~ 9213332 (+) True G234750
TU266296 lncRNA upstream 129801 9210694 ~ 9210940 (+) True G234749
TU266293 lncRNA upstream 130223 9209071 ~ 9210518 (+) False G234748
TU266295 lncRNA upstream 130223 9209104 ~ 9210518 (+) True G234748
TU266391 lncRNA downstream 59124 9400075 ~ 9401002 (+) True G234833
TU266411 lncRNA downstream 90840 9431791 ~ 9432011 (+) True G234853
TU266422 lncRNA downstream 111146 9452097 ~ 9452845 (+) True G234864
TU266447 lncRNA downstream 144636 9485587 ~ 9487958 (+) True CI01000054_09485610_09487896
TU266921 lncRNA downstream 178195 9519146 ~ 9519397 (+) True G235337
CI01000054_09232327_09233391.mRNA mRNA upstream 106499 9231999 ~ 9234242 (+) True CI01000054_09232327_09233391
CI01000054_09151300_09164780.mRNA mRNA upstream 175803 9150785 ~ 9164938 (+) True CI01000054_09151300_09164780
CI01000054_08975450_08984634.mRNA mRNA upstream 355566 8975359 ~ 8985175 (+) True CI01000054_08975450_08984634
CI01000054_08969979_08973590.mRNA mRNA upstream 367075 8969979 ~ 8973666 (+) True CI01000054_08969979_08973590
CI01000054_08908112_08917294.mRNA mRNA upstream 423146 8908112 ~ 8917595 (+) True CI01000054_08908112_08917294
CI01000054_09437674_09440443.mRNA mRNA downstream 95392 9436343 ~ 9441827 (+) True CI01000054_09437674_09440443
CI01000054_09485610_09487896.mRNA mRNA downstream 144290 9485241 ~ 9487967 (+) False CI01000054_09485610_09487896
CI01000054_09556901_09561363.mRNA mRNA downstream 215326 9556277 ~ 9561580 (+) True CI01000054_09556901_09561363
CI01000054_09652700_09656625.mRNA mRNA downstream 311621 9652572 ~ 9656747 (+) True CI01000054_09652700_09656625
CI01000054_09706828_09710100.mRNA mRNA downstream 365877 9706828 ~ 9710525 (+) True CI01000054_09706828_09710100
TU264679 other upstream 1011153 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 1035792 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 1730848 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 2452238 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1047185 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 2224025 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 2292025 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 2307028 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 2307028 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile