RNA id: TCONS_00016742


Basic Information

Item Value
RNA id TCONS_00016742
length 605
lncRNA type lincRNA
GC content 0.39
exon number 4
gene id XLOC_008350
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11982450 ~ 11986634 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttactttaaaaaatattacatttcaagtaataagtttaaaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaagcttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAATTTGATGATCTGCAGGAGCACCACCATGTAAGGAAGGCCAAGACCTCTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTAGTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTATTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCCGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGTAGTGACTGGAAACCAATTGGAAGACTTTGGTCT

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000167797

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016733 lncRNA upstream 291561 11683089 ~ 11691460 (+) False XLOC_008345
TCONS_00016734 lncRNA upstream 296237 11683120 ~ 11686784 (+) True XLOC_008345
TCONS_00016728 lncRNA upstream 677947 11303325 ~ 11305074 (+) True XLOC_008340
TCONS_00016727 lncRNA upstream 1116461 10863850 ~ 10866560 (+) False XLOC_008339
TCONS_00018761 lncRNA upstream 1116461 10864010 ~ 10866560 (+) True XLOC_008339
TCONS_00018896 lncRNA downstream 18996 12004803 ~ 12009399 (+) True XLOC_008351
TCONS_00018897 lncRNA downstream 73433 12059240 ~ 12117730 (+) False XLOC_008353
TCONS_00018898 lncRNA downstream 73433 12059240 ~ 12121438 (+) False XLOC_008353
TCONS_00018899 lncRNA downstream 73433 12059240 ~ 12128436 (+) False XLOC_008353
TCONS_00018900 lncRNA downstream 73433 12059240 ~ 12362508 (+) False XLOC_008353
TCONS_00016740 mRNA upstream 73939 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016739 mRNA upstream 107201 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016738 mRNA upstream 112491 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016737 mRNA upstream 162472 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016735 mRNA upstream 225374 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016751 mRNA downstream 44560 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016752 mRNA downstream 392080 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016753 mRNA downstream 443399 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016754 mRNA downstream 450168 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016755 mRNA downstream 450413 12436220 ~ 12454729 (+) True XLOC_008355
TCONS_00016731 other upstream 417512 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2087035 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2671543 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 2943857 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3251155 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1539067 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1971915 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3408435 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4533160 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4843955 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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