RNA id: TU267183


Basic Information

Item Value
RNA id TU267183
length 283
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G235575
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9576594 ~ 9576876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACATATTTTGTTGCTCCTGGAACAACATTCTTGTCTGAAAATTTAGTCATAACCCTATTTCTACCCCTAAACCTATCCCTACCCATAATTTATCCCTAAAATCAGAGGGAAATGATAGGTGAATAACACTGATGTAGAAGCACCTAACCCTGGTTGTAAGCCTAAACTTGACATAAACTGTAAACTTTTCCCTCAAATCTGATTGGTTGATTGGAATGTTGTTCCAGGATCAACAAAGATGTTGATCCAGGAACATGTTGTACTTGGTAAAATCACGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266952 lncRNA downstream 16691 9556764 ~ 9559903 (-) True G235368
TU266934 lncRNA downstream 49327 9526848 ~ 9527267 (-) True G235350
TU266891 lncRNA downstream 134743 9437469 ~ 9441851 (-) True G235308
TU266878 lncRNA downstream 176028 9400361 ~ 9400566 (-) True G235298
TU266822 lncRNA downstream 259796 9316532 ~ 9316798 (-) True G235250
TU267193 lncRNA upstream 5546 9582422 ~ 9664231 (-) True G235582
TU267203 lncRNA upstream 11183 9588059 ~ 9657253 (-) True G235591
TU267253 lncRNA upstream 93922 9670798 ~ 9671024 (-) True G235641
TU267254 lncRNA upstream 95152 9672028 ~ 9672418 (-) True G235642
TU267255 lncRNA upstream 96184 9673060 ~ 9673526 (-) True G235643
CI01000054_09531778_09544007.mRNA mRNA downstream 32084 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
CI01000054_09495785_09497239.mRNA mRNA downstream 78912 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09488559_09488870.mRNA mRNA downstream 87724 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09483912_09484282.mRNA mRNA downstream 92312 9483812 ~ 9484282 (-) False CI01000054_09483912_09484282
CI01000054_09453616_09482480.mRNA mRNA downstream 93871 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
CI01000054_09650064_09651286.mRNA mRNA upstream 72931 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09686420_09705911.mRNA mRNA upstream 109171 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09812111_09813425.mRNA mRNA upstream 234982 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09831831_09832148.mRNA mRNA upstream 254882 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09841097_09848347.mRNA mRNA upstream 264138 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
TU266869 other downstream 91207 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 91276 9485215 ~ 9485318 (-) False G235290
TU267307 other upstream 286445 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 286445 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 286522 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 1226995 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 1226995 10803871 ~ 10815565 (-) False G236458

Expression Profile