RNA id: TU267253


Basic Information

Item Value
RNA id TU267253
length 227
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G235641
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9670798 ~ 9671024 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGATGCGTAAAGCTCATTGGCGCCACCTGGCGACCATGTTTTTTGAGATACGCCAATACACTAATGTTCAAAAGTTTGGGGTTGGTAAGGTTTTTTTTTTATTTTTATTTTTTTATGTTTTTGAAAGTCTCTTATGCCCACCAAGGCTGCATTTATTTTATCAAAAATACAGTATAAACTGTAATATTATGAAATATTATTACAATTTAAAAGGACAGCTTTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267193 lncRNA downstream 6567 9582422 ~ 9664231 (-) True G235582
TU267203 lncRNA downstream 13545 9588059 ~ 9657253 (-) True G235591
TU267183 lncRNA downstream 93922 9576594 ~ 9576876 (-) True G235575
TU266952 lncRNA downstream 110895 9556764 ~ 9559903 (-) True G235368
TU266934 lncRNA downstream 143531 9526848 ~ 9527267 (-) True G235350
TU267254 lncRNA upstream 1004 9672028 ~ 9672418 (-) True G235642
TU267255 lncRNA upstream 2036 9673060 ~ 9673526 (-) True G235643
TU267257 lncRNA upstream 3432 9674456 ~ 9674878 (-) True G235645
TU267258 lncRNA upstream 3994 9675018 ~ 9675243 (-) True G235646
TU267259 lncRNA upstream 4567 9675591 ~ 9675817 (-) True G235647
CI01000054_09650064_09651286.mRNA mRNA downstream 19512 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09531778_09544007.mRNA mRNA downstream 126288 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
CI01000054_09495785_09497239.mRNA mRNA downstream 173116 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09488559_09488870.mRNA mRNA downstream 181928 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09483912_09484282.mRNA mRNA downstream 186516 9483812 ~ 9484282 (-) False CI01000054_09483912_09484282
CI01000054_09686420_09705911.mRNA mRNA upstream 15023 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09812111_09813425.mRNA mRNA upstream 140834 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09831831_09832148.mRNA mRNA upstream 160734 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09841097_09848347.mRNA mRNA upstream 169990 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
CI01000054_09864693_09866871.mRNA mRNA upstream 193259 9864283 ~ 9867035 (-) False CI01000054_09864693_09866871
TU266869 other downstream 185411 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 185480 9485215 ~ 9485318 (-) False G235290
TU267307 other upstream 192297 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 192297 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 192374 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 1132847 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 1132847 10803871 ~ 10815565 (-) False G236458

Expression Profile