RNA id: TU267340


Basic Information

Item Value
RNA id TU267340
length 2869
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G235706
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9821113 ~ 9829169 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGCTTTGGCATGTTGGGTGAAATATTTGTTTATGCTGTAAACAGACAAACAAACAGCCAAATTTAGATAAAACTACCTCTCTGGGAGCACCAAACTGGATGTAAGTCTCAGAAATCATTTTTGCCCGCCTTTGCAGGCTGAATTTGTTGGATGACTGTCTGTACTGCTCACAGGCTGAGTAGAACTGCAGGTTTTCCTCACTGAATTCAGATCGCAGGAACGCTTCAAAGACTGTGACTCCCACTAAAGGATAGGTGAGATGAGAGAAGGAGAAAGAACCTTAACGAACATTAAAAAAAAAACAGCTATTTCTGTTTACAAATGGGAGGGGTTGAGGCTCAGATGATACGTTCACATGCATGTTCTGCCATACACCCACACACGTTGCATAGCAGTTGCCACAAAAATGAGAGAAGAAAAAACCTTTGGACGTCAATATCTTGAGGGTTTATCTCACACCACATACCTTCCTTCTCTCACATTTTCTCAAAACCCTTGAACTGCGGGGTTGCGACACTCTTGAGTGAGAAAATAGAAGTCGAACGGGGGCAGGGCTCTGGAGTTACAACATACTGGTGTTCCAACATTTCAACCAGTCCAGACACCAAAACACATCCACCACACAATTCAAAAAAAGCTTTAAATGGTGTATAATTTGACCCATAAATAAATATGGCACAAAAAAATATTGAACTTAAAATATGGTTTGGATTTAAAAAGATAAGTCAAGTTTTAATCAAGTTTTAGTTACTGAAAATTCCAGAAAATATTATATGGTTTGAATGGTTGAGCCAAATGCAGTCAACATTATATTTTGAAATAGAATGCAATTTTTATTTCATCATGCTGTAGAAGCAGTCCAAAGGATGTTACATATTTGGTGTCACAATTTTACGAAATGTTGTTTTTTGTAATGTGGGAACATCACATGCGATAAGGTTGATTTATTGAATATCAATTCAACAGATTAAAATATTATGGTTTTGGTAATTAAAATAAGTTTATAATAATCTTCTACAATAAACTGAATATCAATTAAAGGGTTAATTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCCTCAAGCCATCCTAGGTGTACTGTATATGACTTTCTTCTTTCAGATGAACACAATCGGAGATATATTTAAAAATATCCTTAGTCCTCCACGGTTTATAATGGTTGTGAATGGCTGGTCAAATTTTGAAGACAAAAAAATGCATCCATACGACTCCAAGGGGTTAATAAAGGCCTTCTGAAGCGAATTGAAGCGTTTGTGTAAAACAAATATCCTTATTTAAAACTTTATAAATTCAAATAACTAGCTTCCGTACGCATACTGCGCTCTAAACCTTGGAGGACTTTAAGAAAATTTTTAAATATATCTCCGATTGTGTTCGTCTGAAAGAAGATAATTATATACACCTAGGGTGTATCCCATGATTTACTCACTTGAGGGTGAGTAAATCATGGGATAATTTTAATTTTTGGGTGAACTATCCCTTTAAACAGTATGTTATTTATGGAAAGCACTATTACGTATGTATGGAGAGAATTAGTCTCCAAATTAGCAATAGCAGTGACACAGAATCGACTGAATTCCTCACTCTATGTTATACTTTGTCTCAACTGTAACTGCAAAATGTGCTATGTGTGTATCAGTGTATTATTAGATTTTATGAGGTTTGTTACACTAATAAATTGCTTCCAGGGTTATAACAGAAATACAAAAGAGGGCAATACCAACAAAGAGGCTGTTAATCATTAAACCCTATTAATTTTAACAATAAAACAAATCACTCGAAAGATGACATCTGGTGTCAAGACAAGCATAACCATAACCATTATTAGTCCACTGTTTATACATCACAATTTCCATTTAAGGTCAGCTATAATTATCAGTAGTGCTTTCTAAGGAAACTATTATCATTGCCCCTAACCATATACAGCAAGTACTAAACTTCAACACTGTGCTAAGAATATGAATCATACTTCGAATTATGTGGTTTGCTAAGAAGAGGTGTGCTACTACTTTTCTAGGAGATCTGACTAACAATGTTTACATGGTGGACAATGAACAAGGCAAAACATCCTTTAAACTTTCACTCAAGGGACTTGAATCACATCAAGAGTCCTTGTGACTGGTTTTATTTTTCTTTTACCAAACCCTGCCTTCATGCTACAGACTTTTCATAAGCAAGCACCACTCACATTCCCTTCTGAAAATGTAAAAATCTAGGTGGTTTAATCTGTGAAATTGTACGTCAGCGCTCTCAACCTCTTGGGGAAAAGAACATTATTCCGTTATCTCCTTTCTTCATATCGCTTTATGTTGTTAGGGAATTCTCCGGAAACTCATGCCTGAAGCTACACATGAAAGTGGTTCCTCAATGTTAAGAGGAAGCTGTTTCAAGGGTGTTTCAATGATGTAATAGATGGGTTTCACTACAGAACCACCAAAATTGTACTAAGTACACACCAAGCTAACCTACACTACCGTTCAAAAGTTGCATTTATTTGATCAAAAATACAGTATAACATGTGATGGCAAAGCAGCCATTACTCCAGGCTCTTCAGAATTCTTTGGTCAATATAAAGTAAAAAAAACAAACAAACAAAAAAACAAAACGTGACATCTGAACACTTAAAAACGGTTCACTTATGTCATAGAAATATACCTTAGGATAGATCAGTTTCTTGTCTTTTCATGACAGGTCCATGTATAGGTCTTATATCCGAAAGATTCGGAATCGGTTCGTCTTTCAACTGGAGTCCGTATAGACAGAAACACACACAACTGGATCCGAAGCGAGTCAGCTGAACGGAGTGATTCTTCGTGTAACTGTTAGCCGTCAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267374 lncRNA downstream 25118 9793671 ~ 9795995 (-) True G235737
TU267263 lncRNA downstream 123854 9696958 ~ 9697259 (-) True G235651
TU267261 lncRNA downstream 143493 9677283 ~ 9677620 (-) True G235649
TU267260 lncRNA downstream 144318 9676474 ~ 9676795 (-) True G235648
TU267259 lncRNA downstream 145296 9675591 ~ 9675817 (-) True G235647
TU267387 lncRNA upstream 24092 9853261 ~ 9853524 (-) True G235750
TU267398 lncRNA upstream 62611 9891780 ~ 9892046 (-) True G235761
TU267401 lncRNA upstream 99983 9929152 ~ 9936746 (-) True G235764
TU267411 lncRNA upstream 116955 9946124 ~ 9946394 (-) True G235772
TU267431 lncRNA upstream 146611 9975780 ~ 9976208 (-) True G235790
CI01000054_09812111_09813425.mRNA mRNA downstream 7612 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09686420_09705911.mRNA mRNA downstream 115202 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09650064_09651286.mRNA mRNA downstream 169827 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09531778_09544007.mRNA mRNA downstream 276603 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
CI01000054_09495785_09497239.mRNA mRNA downstream 323431 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09831831_09832148.mRNA mRNA upstream 2589 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09841097_09848347.mRNA mRNA upstream 11845 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
CI01000054_09864693_09866871.mRNA mRNA upstream 35114 9864283 ~ 9867035 (-) False CI01000054_09864693_09866871
CI01000054_09914091_09916621.mRNA mRNA upstream 84201 9913370 ~ 9916621 (-) True CI01000054_09914091_09916621
CI01000054_10082299_10083956.mRNA mRNA upstream 252744 10081913 ~ 10084102 (-) True CI01000054_10082299_10083956
TU266869 other downstream 335726 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 335795 9485215 ~ 9485318 (-) False G235290
TU267307 other upstream 34152 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 34152 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 34229 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 974702 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 974702 10803871 ~ 10815565 (-) False G236458

Expression Profile