Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016744 |
| length | 601 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 5 |
| gene id | XLOC_008350 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 11982450 ~ 11986634 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0021571 | rhombomere 5 development | biological_process |
| GO:0021572 | rhombomere 6 development | biological_process |
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0005634 | nucleus | cellular_component |
| ensembl_id | ENSDART00000158700 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016733 | lncRNA | upstream | 291686 | 11683089 ~ 11691460 (+) | False | XLOC_008345 |
| TCONS_00016734 | lncRNA | upstream | 296362 | 11683120 ~ 11686784 (+) | True | XLOC_008345 |
| TCONS_00016728 | lncRNA | upstream | 678072 | 11303325 ~ 11305074 (+) | True | XLOC_008340 |
| TCONS_00016727 | lncRNA | upstream | 1116586 | 10863850 ~ 10866560 (+) | False | XLOC_008339 |
| TCONS_00018761 | lncRNA | upstream | 1116586 | 10864010 ~ 10866560 (+) | True | XLOC_008339 |
| TCONS_00018896 | lncRNA | downstream | 18845 | 12004803 ~ 12009399 (+) | True | XLOC_008351 |
| TCONS_00018897 | lncRNA | downstream | 73282 | 12059240 ~ 12117730 (+) | False | XLOC_008353 |
| TCONS_00018898 | lncRNA | downstream | 73282 | 12059240 ~ 12121438 (+) | False | XLOC_008353 |
| TCONS_00018899 | lncRNA | downstream | 73282 | 12059240 ~ 12128436 (+) | False | XLOC_008353 |
| TCONS_00018900 | lncRNA | downstream | 73282 | 12059240 ~ 12362508 (+) | False | XLOC_008353 |
| TCONS_00016740 | mRNA | upstream | 74064 | 11883804 ~ 11909082 (+) | True | XLOC_008349 |
| TCONS_00016739 | mRNA | upstream | 107326 | 11840311 ~ 11875820 (+) | True | XLOC_008348 |
| TCONS_00016738 | mRNA | upstream | 112616 | 11825366 ~ 11870530 (+) | False | XLOC_008348 |
| TCONS_00016737 | mRNA | upstream | 162597 | 11814969 ~ 11820549 (+) | True | XLOC_008347 |
| TCONS_00016735 | mRNA | upstream | 225499 | 11693624 ~ 11757647 (+) | True | XLOC_008346 |
| TCONS_00016751 | mRNA | downstream | 44409 | 12030367 ~ 12054746 (+) | True | XLOC_008352 |
| TCONS_00016752 | mRNA | downstream | 391929 | 12377887 ~ 12388434 (+) | True | XLOC_008354 |
| TCONS_00016753 | mRNA | downstream | 443248 | 12429206 ~ 12451734 (+) | False | XLOC_008355 |
| TCONS_00016754 | mRNA | downstream | 450017 | 12435975 ~ 12459335 (+) | False | XLOC_008355 |
| TCONS_00016755 | mRNA | downstream | 450262 | 12436220 ~ 12454729 (+) | True | XLOC_008355 |
| TCONS_00016731 | other | upstream | 417637 | 11565391 ~ 11565509 (+) | True | XLOC_008343 |
| TCONS_00016719 | other | upstream | 2087160 | 9895858 ~ 9895986 (+) | True | XLOC_008335 |
| TCONS_00016712 | other | upstream | 2671668 | 9303809 ~ 9311478 (+) | True | XLOC_008326 |
| TCONS_00016703 | other | upstream | 2943982 | 9039050 ~ 9039164 (+) | True | XLOC_008321 |
| TCONS_00016700 | other | upstream | 3251280 | 8731752 ~ 8731866 (+) | True | XLOC_008318 |
| TCONS_00016757 | other | downstream | 1538916 | 13524874 ~ 13524988 (+) | True | XLOC_008360 |
| TCONS_00016758 | other | downstream | 1971764 | 13957722 ~ 13957850 (+) | True | XLOC_008361 |
| TCONS_00016791 | other | downstream | 3408284 | 15394242 ~ 15401640 (+) | True | XLOC_008381 |
| TCONS_00016809 | other | downstream | 4533009 | 16518967 ~ 16519083 (+) | True | XLOC_008398 |
| TCONS_00016813 | other | downstream | 4843804 | 16829762 ~ 16829876 (+) | True | XLOC_008400 |
