RNA id: TU267470


Basic Information

Item Value
RNA id TU267470
length 583
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G235828
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10034153 ~ 10038735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGAAACCCCCTCAAAGGAGCTAGTGTTGAGGGCTCGGTAGATCTCTGCCGTGATGTCCTTGTTATTATAATTAAAGTCTTCCAATCTGCGGCCTTTTGCCTTCAAGGGCCCCACTGTCTTATTGAGCGCCAGAGCCAGGGCCCAAACTGCATCATACGCCAGAGGAGCTTCCTGAAATCCTCCAGTTTCCTCTGGATTCTTCCCACCCAGCTTGGACATCAGCTGTGCTAGGAACTCCTGTGAGGTCAGGTTAGAGGCTCCTCGCACCGTCTCTGGATTGAGCATGACTATCTCAGTGGTCACATGACCCTCCACAGCTTCTGTCATCTGCTCCACAGTGCAGTTGATGGATGGGTCTTTGATCTTGAACCAGTTGTCAGCGTACCAGCCAATCAGAAACCACACATACTTTTTCCCATACAGCTTCTCCTTATAGACCTCACAAAACACTTTCCTGGCTTCCGTTTCATAAAACAGTCCCACAATGATGCGCGCATCTTGGCGCTTGAGGTTCTTGACGGCCACAGCAGGATCCGTGAGGAAACTTTGCCTCACACTGATCTCAATGCCTGCCTCCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267431 lncRNA downstream 57945 9975780 ~ 9976208 (-) True G235790
TU267411 lncRNA downstream 87759 9946124 ~ 9946394 (-) True G235772
TU267401 lncRNA downstream 97407 9929152 ~ 9936746 (-) True G235764
TU267398 lncRNA downstream 142107 9891780 ~ 9892046 (-) True G235761
TU267387 lncRNA downstream 180629 9853261 ~ 9853524 (-) True G235750
TU267301 lncRNA upstream 168118 10206853 ~ 10214403 (-) True G235678
TU267291 lncRNA upstream 180970 10219705 ~ 10295938 (-) True G235674
TU267533 lncRNA upstream 341978 10380713 ~ 10380930 (-) True G235890
TU267538 lncRNA upstream 375219 10413954 ~ 10414236 (-) True G235895
TU267567 lncRNA upstream 384655 10423390 ~ 10423600 (-) True G235919
CI01000054_09914091_09916621.mRNA mRNA downstream 117532 9913370 ~ 9916621 (-) True CI01000054_09914091_09916621
CI01000054_09864693_09866871.mRNA mRNA downstream 167118 9864283 ~ 9867035 (-) False CI01000054_09864693_09866871
CI01000054_09841097_09848347.mRNA mRNA downstream 185261 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
CI01000054_09831831_09832148.mRNA mRNA downstream 202005 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09812111_09813425.mRNA mRNA downstream 220652 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_10082299_10083956.mRNA mRNA upstream 43178 10081913 ~ 10084102 (-) True CI01000054_10082299_10083956
CI01000054_10124266_10128452.mRNA mRNA upstream 85319 10124054 ~ 10128452 (-) True CI01000054_10124266_10128452
CI01000054_10162998_10168490.mRNA mRNA upstream 124232 10162967 ~ 10169049 (-) True CI01000054_10162998_10168490
CI01000054_10222056_10229581.mRNA mRNA upstream 183211 10221946 ~ 10229581 (-) True CI01000054_10222056_10229581
CI01000054_10230849_10243712.mRNA mRNA upstream 192114 10230849 ~ 10243838 (-) True CI01000054_10230849_10243712
TU267309 other downstream 166941 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267307 other downstream 167095 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267308 other downstream 167095 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU266869 other downstream 548766 9485215 ~ 9485387 (-) True G235290
TU266866 other downstream 548835 9485215 ~ 9485318 (-) False G235290
TU268158 other upstream 765136 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 765136 10803871 ~ 10815565 (-) False G236458
TU268160 other upstream 765136 10803871 ~ 10816162 (-) True G236458
TU268162 other upstream 832369 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268494 other upstream 1246459 11285194 ~ 11291240 (-) False G236748

Expression Profile