RNA id: TU267318


Basic Information

Item Value
RNA id TU267318
length 1728
lncRNA type read_through
GC content 0.34
exon number 2
gene id G235687
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10034760 ~ 10122699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGAACAAAGCTTTTTAATAAGGCTTTCATGGATTTGGTGACATATAGACACTAAAATTACACTACAGCAAAAATGACAAACACGTTTTCTTACTTTCCTTATCACGCCACAGTACTAATTTATGAACATTTTGTTTGTATTAACATGTTTATCACTCTTACAAGCCAAAGATATGCTAGACCTTCCCTTGTTGTCCATTATTGTCAGCTCACTTGTAGTAAAGTGAAACAGAACTGTAGTATTTGTGCTCTTATGTAGTATAAACAGGTAGTTCACCCAGAAATGGAAATTCTGTCATTTTTACAAAAGAAATTTTTAAGAATGTTAAGGTTAAAAAAATTTTGGACCTCACTGATTTTAAATGTTTGGACAAATAATTTTTTTAAAAAAGCACAAAGGACACTTTTCAAAATATCTTCTATGTTCCACAGAAAGAAAAAAAAAAGTCATACAGGTTTGGAACAATATAAGGCAGGGGTCTCTAACACCACTTGAAAGCTACCAGTAGCTCGTGGGCTGATTTAAAGAGATAGTTCACCAAAAAAATGAAAAGCATTTACTCACACCTCAAGTTATTTCAAACCTGTATGAATTTCTTTCTTCTGCTGAACACAAAAGAAGATATTTAAAAAAATGTGTAACCAAACAGTTGATGGGCCCCACTGACTTCCATAGTATGGAAAAAAAAATACTATGGAAGTCACTGGGGCCCATCATCAGTTTGGTTACAACTTGGTGATGAGTAAATGATGACATAATTTTCATGTTTGGGTGAACTATCCCTTTAAGGTAGCTCGCCAAGACATAGTACTTTTCATCCAATCAGAGTGAGCTAATATAGACAGGTGTCCCACCCCCTCCAATGCATATTAAGTATTTATTTGACATATTGGCCATGAGGTTATTTATTTCTGAACATGCAGATGTAATTACAATATAAAAGGATAACAACCAACAATAGAAAAAAAACCTTGACACGTTTGAGAGTTATGATACATTATTTAAGAAATTTTAAGTATTGTATAACATGAGTAACTCTCAGCCACTTTCATTTTTAAAAAGTAGTTCTCAAATGAAATAAGGTTGGAGACGCCTGACATAAGGGAATTATAGAAAATTACAGAATTTTCTTTTTTGGGTAAACTCCCTATAAGTGAATATAAAAGCCAATTCACACTGACCAACAAGGGCATTCCTAAGATGACAGCACGTCACTTCTCAGACATTCTACTACCCAACAAACGGCAACTGAACATGCGAAAACAAGTGCCGAACAGTGCCAACACAAAAACACTGGTCGCCACTTGTGTGCAAAAACAAAACAAAAATAACGACTTAATTCAACAATTTTGTAGAACCCGGAAGCGCTGCACTGTCTATACAATGTAAACAGCATAGGAGAATGACAGGGTAGAGAAGAAATTGTTGAATAAAGTCATTATTTTTGTTTCATTTTTGCACACAAAAACTATTCTTGTCGCTTCATAACATTAAGATTGAACCACTGTAGTCAAGTTGACTATCTTAATGATGTCTTTACTACTTTTTTGGACCTTGATTGTGGTAAATACGTTGTCTTCTTTGGGGGATAAAACAAACCTCTTGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACGGGTGTGGAATGACATGAGGGTACTTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267431 lncRNA downstream 58552 9975780 ~ 9976208 (-) True G235790
TU267411 lncRNA downstream 88366 9946124 ~ 9946394 (-) True G235772
TU267401 lncRNA downstream 98014 9929152 ~ 9936746 (-) True G235764
TU267398 lncRNA downstream 142714 9891780 ~ 9892046 (-) True G235761
TU267387 lncRNA downstream 181236 9853261 ~ 9853524 (-) True G235750
TU267301 lncRNA upstream 84154 10206853 ~ 10214403 (-) True G235678
TU267291 lncRNA upstream 97006 10219705 ~ 10295938 (-) True G235674
TU267533 lncRNA upstream 258014 10380713 ~ 10380930 (-) True G235890
TU267538 lncRNA upstream 291255 10413954 ~ 10414236 (-) True G235895
TU267567 lncRNA upstream 300691 10423390 ~ 10423600 (-) True G235919
CI01000054_09914091_09916621.mRNA mRNA downstream 118139 9913370 ~ 9916621 (-) True CI01000054_09914091_09916621
CI01000054_09864693_09866871.mRNA mRNA downstream 167725 9864283 ~ 9867035 (-) False CI01000054_09864693_09866871
CI01000054_09841097_09848347.mRNA mRNA downstream 185868 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
CI01000054_09831831_09832148.mRNA mRNA downstream 202612 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09812111_09813425.mRNA mRNA downstream 221259 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_10124266_10128452.mRNA mRNA upstream 1355 10124054 ~ 10128452 (-) True CI01000054_10124266_10128452
CI01000054_10162998_10168490.mRNA mRNA upstream 40268 10162967 ~ 10169049 (-) True CI01000054_10162998_10168490
CI01000054_10222056_10229581.mRNA mRNA upstream 99247 10221946 ~ 10229581 (-) True CI01000054_10222056_10229581
CI01000054_10230849_10243712.mRNA mRNA upstream 108150 10230849 ~ 10243838 (-) True CI01000054_10230849_10243712
CI01000054_10248885_10261371.mRNA mRNA upstream 125902 10248601 ~ 10261371 (-) True CI01000054_10248885_10261371
TU267309 other downstream 167548 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267307 other downstream 167702 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267308 other downstream 167702 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU266869 other downstream 549373 9485215 ~ 9485387 (-) True G235290
TU266866 other downstream 549442 9485215 ~ 9485318 (-) False G235290
TU268158 other upstream 681172 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 681172 10803871 ~ 10815565 (-) False G236458
TU268160 other upstream 681172 10803871 ~ 10816162 (-) True G236458
TU268162 other upstream 748405 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268494 other upstream 1162495 11285194 ~ 11291240 (-) False G236748

Expression Profile