RNA id: TU267542


Basic Information

Item Value
RNA id TU267542
length 268
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G235899
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10415450 ~ 10415717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGTGGAAGAGTGACCTCTGACCCAATGCATGACATATTGATGAACGCAGAAGCGCTGAGGATAGAGCAAAACAAAACACCACTCATGAATTAGAAGCCTAAAATGAGAATTTTTAAAGAGAAATGTTGGAGGATTTCGATATAAGAGAAGAGAAGCTCTATTTGTTTGAACCGCAAGAGGCGTCTACTCTCACCTAAGCTCACGCTACTCCTACATCCTACATCATACGTCGGGTCAGAGTCAGAGGTCAATCTTCCACCAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267170 lncRNA upstream 2555 10396344 ~ 10412895 (+) True G235562
TU267159 lncRNA upstream 34535 10380714 ~ 10380915 (+) True G235557
TU267123 lncRNA upstream 128759 10283939 ~ 10286691 (+) True G235522
TU267108 lncRNA upstream 177550 10237549 ~ 10237900 (+) True G235508
TU267102 lncRNA upstream 225512 10189691 ~ 10189938 (+) True G235502
TU267545 lncRNA downstream 3084 10418801 ~ 10419141 (+) True G235902
TU267563 lncRNA downstream 22141 10437858 ~ 10438473 (+) True G235915
TU267581 lncRNA downstream 27711 10443428 ~ 10443646 (+) True G235932
TU267625 lncRNA downstream 39129 10454846 ~ 10455284 (+) True G235968
TU267680 lncRNA downstream 140103 10555820 ~ 10556236 (+) True G236023
CI01000054_10246428_10247072.mRNA mRNA upstream 168327 10246428 ~ 10247123 (+) True CI01000054_10246428_10247072
CI01000054_10215898_10219704.mRNA mRNA upstream 195516 10215898 ~ 10219934 (+) True CI01000054_10215898_10219704
CI01000054_10199933_10212166.mRNA mRNA upstream 202940 10199933 ~ 10212510 (+) True CI01000054_10199933_10212166
CI01000054_10180219_10184702.mRNA mRNA upstream 230709 10180150 ~ 10184741 (+) True CI01000054_10180219_10184702
CI01000054_10172867_10177625.mRNA mRNA upstream 236566 10172867 ~ 10178884 (+) True CI01000054_10172867_10177625
CI01000054_10420267_10420899.mRNA mRNA downstream 4439 10420156 ~ 10422089 (+) True CI01000054_10420267_10420899
CI01000054_10467566_10471168.mRNA mRNA downstream 51849 10467566 ~ 10471477 (+) True CI01000054_10467566_10471168
CI01000054_10508500_10513655.mRNA mRNA downstream 92783 10508500 ~ 10513857 (+) True CI01000054_10508500_10513655
CI01000054_10601018_10615939.mRNA mRNA downstream 185257 10600974 ~ 10615954 (+) False CI01000054_10601018_10615939
CI01000054_10751348_10752449.mRNA mRNA downstream 335578 10751295 ~ 10752511 (+) True CI01000054_10751348_10752449
TU267167 other upstream 23072 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2085862 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2110501 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 2805557 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 3526947 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 1149259 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 1217259 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 1232262 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 1232262 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 1397971 11813688 ~ 11816475 (+) True G236874

Expression Profile