RNA id: TU268071


Basic Information

Item Value
RNA id TU268071
length 289
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G236383
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10454828 ~ 10455116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCATGTCGTTCTACACCAGTAAGGCCTTCATTCATCTTCGGAACACAAAGATATTTTTGATTAAATCCGATGGCTCAGTGAGGCCTGCATTCAAAGCAATGACATTTCCTCTCTCAAGATCCATAAAGGTACTAAAAACATATTTAAAACAGTTCATGCGAGTTCAGTAGTTCTACCTTAATATTATAAAGCGACGAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTTCAACAATATAGTGATGGGCGATTTCAAAACACTGCTTCGGAGCTTTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267572 lncRNA downstream 24048 10430552 ~ 10430780 (-) True G235924
TU267567 lncRNA downstream 31228 10423390 ~ 10423600 (-) True G235919
TU267538 lncRNA downstream 40592 10413954 ~ 10414236 (-) True G235895
TU267533 lncRNA downstream 73898 10380713 ~ 10380930 (-) True G235890
TU267291 lncRNA downstream 158890 10219705 ~ 10295938 (-) True G235674
TU268084 lncRNA upstream 18954 10474070 ~ 10511429 (-) True G236394
TU268077 lncRNA upstream 115109 10570225 ~ 10602954 (-) True G236387
TU268074 lncRNA upstream 161853 10616969 ~ 10628310 (-) True G236384
TU268183 lncRNA upstream 283426 10738542 ~ 10738848 (-) True G236480
TU268210 lncRNA upstream 317129 10772245 ~ 10824773 (-) True G236506
CI01000054_10389232_10412773.mRNA mRNA downstream 42055 10389232 ~ 10412773 (-) True CI01000054_10389232_10412773
CI01000054_10269355_10363708.mRNA mRNA downstream 90679 10268720 ~ 10364149 (-) True CI01000054_10269355_10363708
CI01000054_10248885_10261371.mRNA mRNA downstream 193457 10248601 ~ 10261371 (-) True CI01000054_10248885_10261371
CI01000054_10230849_10243712.mRNA mRNA downstream 210990 10230849 ~ 10243838 (-) True CI01000054_10230849_10243712
CI01000054_10222056_10229581.mRNA mRNA downstream 225247 10221946 ~ 10229581 (-) True CI01000054_10222056_10229581
CI01000054_10518872_10568706.mRNA mRNA upstream 63756 10518872 ~ 10568706 (-) True CI01000054_10518872_10568706
CI01000054_10645438_10672411.mRNA mRNA upstream 190026 10645142 ~ 10672681 (-) True CI01000054_10645438_10672411
CI01000054_10817235_10819181.mRNA mRNA upstream 362026 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_10872970_10881017.mRNA mRNA upstream 417699 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10910820_10938477.mRNA mRNA upstream 455258 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
TU267309 other downstream 587616 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267307 other downstream 587770 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267308 other downstream 587770 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU266869 other downstream 969441 9485215 ~ 9485387 (-) True G235290
TU266866 other downstream 969510 9485215 ~ 9485318 (-) False G235290
TU268158 other upstream 348755 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 348755 10803871 ~ 10815565 (-) False G236458
TU268160 other upstream 348755 10803871 ~ 10816162 (-) True G236458
TU268162 other upstream 415988 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268494 other upstream 830078 11285194 ~ 11291240 (-) False G236748

Expression Profile