RNA id: TU267680


Basic Information

Item Value
RNA id TU267680
length 381
lncRNA type intronic
GC content 0.28
exon number 2
gene id G236023
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10555820 ~ 10556236 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCATGGCAGATTTAAAGTCAATTAAAATATAAAGAATTAAATTAAGAAATAAATAAACAGAAATCTTATTTACTATAAGCAAATAATTAAATAAGCAAATAAATCAATCATTTAATCAATCAATCACTCAATCAATTACTTAATCACTCAATCAATCAATCAAATCAACTCACTCACTCACTCGATCACTCGATCAATCACTCGATCATTTAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCCATCCTGTCCTAACTTTTTTTGGTTGAATATCTGTTTCACTCTAATCATATCAGAAATAAAATGGGCTGTGGACACTGTTTCACATTGACTTGTCTTCAAACATTAAAAGACCAAGCCAAATCTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267625 lncRNA upstream 100536 10454846 ~ 10455284 (+) True G235968
TU267581 lncRNA upstream 112174 10443428 ~ 10443646 (+) True G235932
TU267563 lncRNA upstream 117347 10437858 ~ 10438473 (+) True G235915
TU267545 lncRNA upstream 136679 10418801 ~ 10419141 (+) True G235902
TU267542 lncRNA upstream 140103 10415450 ~ 10415717 (+) True G235899
TU267693 lncRNA downstream 32838 10589074 ~ 10591197 (+) True G236036
TU267715 lncRNA downstream 51299 10607535 ~ 10608326 (+) True G236055
TU267775 lncRNA downstream 172817 10729053 ~ 10729327 (+) True G236115
TU267788 lncRNA downstream 182331 10738567 ~ 10738884 (+) True G236128
TU267809 lncRNA downstream 290656 10846892 ~ 10847093 (+) True G236149
CI01000054_10508500_10513655.mRNA mRNA upstream 41963 10508500 ~ 10513857 (+) True CI01000054_10508500_10513655
CI01000054_10467566_10471168.mRNA mRNA upstream 84343 10467566 ~ 10471477 (+) True CI01000054_10467566_10471168
CI01000054_10420267_10420899.mRNA mRNA upstream 133731 10420156 ~ 10422089 (+) True CI01000054_10420267_10420899
CI01000054_10246428_10247072.mRNA mRNA upstream 308697 10246428 ~ 10247123 (+) True CI01000054_10246428_10247072
CI01000054_10215898_10219704.mRNA mRNA upstream 335886 10215898 ~ 10219934 (+) True CI01000054_10215898_10219704
CI01000054_10601018_10615939.mRNA mRNA downstream 44738 10600974 ~ 10615954 (+) False CI01000054_10601018_10615939
CI01000054_10751348_10752449.mRNA mRNA downstream 195059 10751295 ~ 10752511 (+) True CI01000054_10751348_10752449
CI01000054_10759809_10795763.mRNA mRNA downstream 203573 10759809 ~ 10795780 (+) True CI01000054_10759809_10795763
CI01000054_10797926_10802248.mRNA mRNA downstream 241614 10797850 ~ 10802958 (+) True CI01000054_10797926_10802248
CI01000054_10805413_10815170.mRNA mRNA downstream 249177 10805413 ~ 10815359 (+) True CI01000054_10805413_10815170
TU267167 other upstream 163442 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2226232 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2250871 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 2945927 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 3667317 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 1008740 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 1076740 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 1091743 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 1091743 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 1257452 11813688 ~ 11816475 (+) True G236874

Expression Profile