RNA id: TCONS_00018894


Basic Information

Item Value
RNA id TCONS_00018894
length 2287
lncRNA type inter_gene
GC content 0.36
exon number 6
gene id XLOC_008350
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11982450 ~ 11986634 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgcgatcccaagcttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAATTTGATGATCTGCAGGAGCACCACCATGTAAGGAAGGCCAAGACCTCTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcaCTACTATGGTAATAACAGAAAGAGAAGCAttagttttactattactattgtttatgacaaacattaaaaaactacagtataagctcacaaaatattgtggcctaactgtttaaaactatttgctCTGGGTGTTGATTAGTggccaaccattttttttctttttcagaaagtattttgttttgtctaattttatgacaccttataggccatcaactgtccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAAAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTCCCTGTATCTGTAGACCTAGGTGACAGTGGACTAGAgtcaaattttgtttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcacgtattaatatatcctaaaatatttttttattatttccattggtggaaaagatgctggtataattatttttaatggactgctaagatctcagcagacatttttcttaAATGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAACCCTTTATCTGTCCTGCTTCCACACCAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACAAGGTACTTTAAGCTGTATGTgttgaaactaaattaacaaaaaaacagcTCTTTGATGTTCACCTAGTAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGGATTTTTGAAGGTTTGTTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTATCTTAAACTGATCTACAAGTAAATGCCAAAACTTATtggtttacttatttgtttgtttgtttgtttgtttttttgtatatgttaACCAGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTAGTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTATTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCCGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGTAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAATGGGCAGAGGcagaagcaaagacaacaaacaacaaaagtGATATGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagaggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCCTGCTTATTTGCTTCTGAAATGTACTGATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatacatttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataaccaaa

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016733 lncRNA upstream 291710 11683089 ~ 11691460 (+) False XLOC_008345
TCONS_00016734 lncRNA upstream 296386 11683120 ~ 11686784 (+) True XLOC_008345
TCONS_00016728 lncRNA upstream 678096 11303325 ~ 11305074 (+) True XLOC_008340
TCONS_00016727 lncRNA upstream 1116610 10863850 ~ 10866560 (+) False XLOC_008339
TCONS_00018761 lncRNA upstream 1116610 10864010 ~ 10866560 (+) True XLOC_008339
TCONS_00018896 lncRNA downstream 18169 12004803 ~ 12009399 (+) True XLOC_008351
TCONS_00018897 lncRNA downstream 72606 12059240 ~ 12117730 (+) False XLOC_008353
TCONS_00018898 lncRNA downstream 72606 12059240 ~ 12121438 (+) False XLOC_008353
TCONS_00018899 lncRNA downstream 72606 12059240 ~ 12128436 (+) False XLOC_008353
TCONS_00018900 lncRNA downstream 72606 12059240 ~ 12362508 (+) False XLOC_008353
TCONS_00016740 mRNA upstream 74088 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016739 mRNA upstream 107350 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016738 mRNA upstream 112640 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016737 mRNA upstream 162621 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016735 mRNA upstream 225523 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016751 mRNA downstream 43733 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016752 mRNA downstream 391253 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016753 mRNA downstream 442572 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016754 mRNA downstream 449341 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016755 mRNA downstream 449586 12436220 ~ 12454729 (+) True XLOC_008355
TCONS_00016731 other upstream 417661 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2087184 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2671692 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 2944006 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3251304 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1538240 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1971088 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3407608 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4532333 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4843128 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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