RNA id: TU267788


Basic Information

Item Value
RNA id TU267788
length 318
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G236128
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10738567 ~ 10738884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCCCCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTTTTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCATTATTTTAGCTGTGTGCTTAGGGTCATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267775 lncRNA upstream 9240 10729053 ~ 10729327 (+) True G236115
TU267715 lncRNA upstream 125915 10607535 ~ 10608326 (+) True G236055
TU267693 lncRNA upstream 147370 10589074 ~ 10591197 (+) True G236036
TU267680 lncRNA upstream 182331 10555820 ~ 10556236 (+) True G236023
TU267625 lncRNA upstream 283283 10454846 ~ 10455284 (+) True G235968
TU267809 lncRNA downstream 108008 10846892 ~ 10847093 (+) True G236149
TU267810 lncRNA downstream 111209 10850093 ~ 10850307 (+) True G236150
TU267841 lncRNA downstream 143794 10882678 ~ 10883126 (+) True CI01000054_10884460_10894800
TU267861 lncRNA downstream 188079 10926963 ~ 10949688 (+) False G236195
TU267862 lncRNA downstream 202726 10941610 ~ 10949688 (+) True G236195
CI01000054_10601018_10615939.mRNA mRNA upstream 122613 10600974 ~ 10615954 (+) False CI01000054_10601018_10615939
CI01000054_10508500_10513655.mRNA mRNA upstream 224710 10508500 ~ 10513857 (+) True CI01000054_10508500_10513655
CI01000054_10467566_10471168.mRNA mRNA upstream 267090 10467566 ~ 10471477 (+) True CI01000054_10467566_10471168
CI01000054_10420267_10420899.mRNA mRNA upstream 316478 10420156 ~ 10422089 (+) True CI01000054_10420267_10420899
CI01000054_10246428_10247072.mRNA mRNA upstream 491444 10246428 ~ 10247123 (+) True CI01000054_10246428_10247072
CI01000054_10751348_10752449.mRNA mRNA downstream 12411 10751295 ~ 10752511 (+) True CI01000054_10751348_10752449
CI01000054_10759809_10795763.mRNA mRNA downstream 20925 10759809 ~ 10795780 (+) True CI01000054_10759809_10795763
CI01000054_10797926_10802248.mRNA mRNA downstream 58966 10797850 ~ 10802958 (+) True CI01000054_10797926_10802248
CI01000054_10805413_10815170.mRNA mRNA downstream 66529 10805413 ~ 10815359 (+) True CI01000054_10805413_10815170
CI01000054_10884460_10894800.mRNA mRNA downstream 142700 10881584 ~ 10894954 (+) False CI01000054_10884460_10894800
TU267167 other upstream 346189 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2408979 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2433618 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3128674 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 3850064 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 826092 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 894092 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 909095 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 909095 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 1074804 11813688 ~ 11816475 (+) True G236874

Expression Profile