RNA id: TU268157


Basic Information

Item Value
RNA id TU268157
length 316
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G236458
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10803871 ~ 10816186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTGATGTGGTTGTAGATCTCGCCATTGTAACATAGCCACAGGTAGGGGAATTTCTTTACTCGCAGAGGCTGCATGCCATACAGTTGGTCCACTATAGCGAGGCGGTGAAACCCAAAGCAGCAGTTGATGAAACCATTGACATTCTCAAAGCGGAAAGCATCTGGACCACGATGAGCGATCTTCATGGCATTAGTGCACTGAATTGCAAGGCACTCATCGCTACCAAACACGGCCCATATACCACACATTCTGATGTGTAAAAGATGCTTGATTTGGTCTGGATTGGCTGAAAATAGAGAGCTACCCGTTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268183 lncRNA downstream 65023 10738542 ~ 10738848 (-) True G236480
TU268074 lncRNA downstream 175561 10616969 ~ 10628310 (-) True G236384
TU268077 lncRNA downstream 200917 10570225 ~ 10602954 (-) True G236387
TU268084 lncRNA downstream 292442 10474070 ~ 10511429 (-) True G236394
TU268071 lncRNA downstream 348755 10454828 ~ 10455116 (-) True G236383
TU268237 lncRNA upstream 42619 10848288 ~ 10848555 (-) True G236533
TU268246 lncRNA upstream 62118 10867787 ~ 10867998 (-) True G236542
TU268256 lncRNA upstream 89262 10894931 ~ 10895319 (-) True G236551
TU268259 lncRNA upstream 92798 10898467 ~ 10898951 (-) True G236554
TU268263 lncRNA upstream 97463 10903132 ~ 10904729 (-) True G236555
CI01000054_10645438_10672411.mRNA mRNA downstream 131190 10645142 ~ 10672681 (-) True CI01000054_10645438_10672411
CI01000054_10518872_10568706.mRNA mRNA downstream 235165 10518872 ~ 10568706 (-) True CI01000054_10518872_10568706
CI01000054_10389232_10412773.mRNA mRNA downstream 391098 10389232 ~ 10412773 (-) True CI01000054_10389232_10412773
CI01000054_10269355_10363708.mRNA mRNA downstream 439722 10268720 ~ 10364149 (-) True CI01000054_10269355_10363708
CI01000054_10248885_10261371.mRNA mRNA downstream 542500 10248601 ~ 10261371 (-) True CI01000054_10248885_10261371
CI01000054_10817235_10819181.mRNA mRNA upstream 11473 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_10872970_10881017.mRNA mRNA upstream 67146 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10910820_10938477.mRNA mRNA upstream 104705 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10949424_10950271.mRNA mRNA upstream 143650 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_11097818_11099299.mRNA mRNA upstream 292039 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
TU267309 other downstream 936659 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267307 other downstream 936813 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267308 other downstream 936813 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU266869 other downstream 1318484 9485215 ~ 9485387 (-) True G235290
TU266866 other downstream 1318553 9485215 ~ 9485318 (-) False G235290
TU268162 other upstream 65435 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268494 other upstream 479525 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 479525 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 973221 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 973788 11782349 ~ 11782484 (-) True G237082

Expression Profile