RNA id: TU267861


Basic Information

Item Value
RNA id TU267861
length 267
lncRNA type read_through
GC content 0.31
exon number 3
gene id G236195
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10926963 ~ 10949688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTTTTTTTTTTTTTTTGTGTTTTATGTTTTATTTCAAGTAACAAACACTGGACAACTGTTTACATATTTTTTTTACAAACACAGAAAATATCCAATTATACAAAAACTGTCAAATTAAATTAAAAGTGCTGTTTAACCGCTTAATGTAACCTCAAACGGGTAATGCTGGGGAAAGTCATGAAGAACTTTCAGGCCTTCTATGTGAAACAGCCATGATTGTTCCTTTGTTGGACACCATTCCAATAACCTCTACAATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267841 lncRNA upstream 43837 10882678 ~ 10883126 (+) True CI01000054_10884460_10894800
TU267810 lncRNA upstream 76656 10850093 ~ 10850307 (+) True G236150
TU267809 lncRNA upstream 79870 10846892 ~ 10847093 (+) True G236149
TU267788 lncRNA upstream 188079 10738567 ~ 10738884 (+) True G236128
TU267775 lncRNA upstream 197636 10729053 ~ 10729327 (+) True G236115
TU267840 lncRNA downstream 64443 11014131 ~ 11075365 (+) True G236176
TU267890 lncRNA downstream 200121 11150613 ~ 11151616 (+) True G236220
TU267919 lncRNA downstream 277038 11226726 ~ 11233234 (+) True G236249
TU267927 lncRNA downstream 294375 11244063 ~ 11244283 (+) True G236257
TU267892 lncRNA downstream 327723 11277411 ~ 11279005 (+) True G236222
CI01000054_10905705_10908903.mRNA mRNA upstream 17907 10902548 ~ 10909056 (+) True CI01000054_10905705_10908903
CI01000054_10884460_10894800.mRNA mRNA upstream 32009 10881584 ~ 10894954 (+) False CI01000054_10884460_10894800
CI01000054_10805413_10815170.mRNA mRNA upstream 111604 10805413 ~ 10815359 (+) True CI01000054_10805413_10815170
CI01000054_10797926_10802248.mRNA mRNA upstream 124005 10797850 ~ 10802958 (+) True CI01000054_10797926_10802248
CI01000054_10759809_10795763.mRNA mRNA upstream 131183 10759809 ~ 10795780 (+) True CI01000054_10759809_10795763
CI01000054_10964288_10964566.mRNA mRNA downstream 14600 10964288 ~ 10964649 (+) True CI01000054_10964288_10964566
CI01000054_10985849_11004067.mRNA mRNA downstream 34400 10984088 ~ 11004096 (+) True CI01000054_10985849_11004067
CI01000054_11032632_11091062.mRNA mRNA downstream 82944 11032632 ~ 11091062 (+) True CI01000054_11032632_11091062
CI01000054_11126599_11136327.mRNA mRNA downstream 174933 11124621 ~ 11137242 (+) True CI01000054_11126599_11136327
CI01000054_11142387_11149427.mRNA mRNA downstream 192294 11141982 ~ 11150123 (+) False CI01000054_11142387_11149427
TU267167 other upstream 534585 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2597375 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2622014 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3317070 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 4038460 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 615288 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 683288 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 698291 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 698291 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 864000 11813688 ~ 11816475 (+) True G236874

Expression Profile