RNA id: TU268298


Basic Information

Item Value
RNA id TU268298
length 2112
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G236570
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10964298 ~ 10966446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGTAATCAAATAAGATTTTAATTAAACAACATCATTACATTCCGCTCATGCTCAAAATTTAGCATAAACATCATGTGGGATCAGAATCAATGAGGAATTCTGTTCCAGATATAAATCAATAAGGAATCCATAGTTAAGGTGATGGCATAATATTTACCTGAAAAAAGTGGCATTAAATTATTTTACAGACATTTTAAAGGGCAAAGACAGCACAACGCAAACTTTGATTACTTCAGTACAGTGTTTTGAAAAGTGACTGAGATAAATTAGGAGGAACCTATTAACCTTAGATGAAGTAACTGTCAGACAAATCAAAACAAAGAGATAAAAAGTGAGATTTGATGTGATATTAAGCGAATAAACTAAACCGATATCAAGTAAAGTACAGAGGATGTAAAGGAGACACAGCTAAACTCCTGAGTGCATTGTTTAAATAGCAGCACGCACTATAAAACCCATCCATTAACTGAAATTCAGATGAAGAAAAAAAAAAAAAACCCAGATCAACAACCATGTGACCTATTCAAAAAGAACAGTAAATCCTATTAAAATCCATGTGCATGTTTTTGCAATTAAACATTGTTCAGAATACATATCTGCCTCCCAAAATGGCCTGCTATCTAGCAGAACTTCAAAACTTCATGCATTAAAACCAAACAACAACAGTAGAGGTACAATGTTCACACACACACACAAAAAAAAAATATATATATATATATAAAACAAAGGGATATAATGTTGGCCTATTTATAATGAGCACTGCAATGTTCGTCTCTCAATTTTAAGTGCAATCCTTTCACTAAGGTGATGTGTGTATTTTTTGTGATGTAAAAATACTTCATATCCCAACTTAATATGCGGAAACAACTAGAAGTAAGCTATATTCTATACTGATTACCCTGAAAAGTGTAAACACTGCATTACTATCAAAATATTGTTCTGTATGAGCATCCTGAACAGCCCGGCACAGCGACACTGACTCAACCAATGGCGTCAGTTTAGGGTGGGACTATCTGTTTGGTTGACCAATGGCAGACAGGGGAGTGTTTAAGGTTTACTGGTACTCACTGTAGAGTTACAGCAAATGTAGCGGACTAGCCAAAGGCCTTTATGATTGCCATTTTTAATATTTATATATATTTTAAAAGTATAATTTATATTTGAATTAAATACTTCTATCTATTAACAAATTATTTATTTTAGATATGTTTAAAGAATTACATTGCTGGGTGACTAGTTACTATAAAATCATTCTTTCTGTGTATCATGACTGGTTTAAGTGAACGATCTGCAAGCAAACTTCTTGAAACCGATTCCATAAATTACAGTAAGTCTTTGCAGAACTAAGAAGAAACTGAGGAAGGCTAACATAGACTGCGGCGTCTGAAACATCACACAACCGAATGCAACTATTCAGAAACATAGCATCGAAACTATTTCAGCATATCATCTTATGCTACAGGACCCCACAGAGTCAAAATGCAAAATTGCACAGATTTTACACCCGTAAAATTTGAACTACATTTGAAAAATGTAAAGCCATAGGTCATCTTATAAATACTCATCTACTGTTTTTAAATGAGGCGGTAACACTCAGCTCACACAATAAAGTGTAAGATCCTGAGAGACTGTAAACCATTTTGATGCGAACTTCACTAACTTATTTAAACTAAATGGAAAATATGTTCGTTTGAGCCCAACACCCTATAGTCAGTGACCGATTTTTGTCAGCTAACTGAAACTAGATCTTCATTTATTTAAGAGGCAAGCGGTTAAGGAGAATCTTGACAACCAAATGCTCGTAGTTCATCACGTGTTAGTGATATAACTGATGTGAGAGTCATGGCTCACAAAGCACAGAGTTCTCCAGAGAGAAGTCATAACGAAAGTTGGCTAGTTTGTCATTTATGTCAGAAGGCAAGGTGATATCTGTTACAAAGGGCAGGCCCGCCTGCATGGCCAGGATATGTGGTGCTAAAGTGAAAGGTATATCTCCTAGAAGTTCAGTGAGAGCAGGGGTGGCGTCTACACTGTGCGTTTCTGAGGACATCTTAGCAGATGTGGGCTGGGAGGAAGGCTGAGCCGTCTCTGTAAATCCTCTGTTCCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268263 lncRNA downstream 59569 10903132 ~ 10904729 (-) True G236555
TU268259 lncRNA downstream 65347 10898467 ~ 10898951 (-) True G236554
TU268256 lncRNA downstream 68979 10894931 ~ 10895319 (-) True G236551
TU268246 lncRNA downstream 96300 10867787 ~ 10867998 (-) True G236542
TU268237 lncRNA downstream 115743 10848288 ~ 10848555 (-) True G236533
TU268335 lncRNA upstream 34881 11001327 ~ 11001582 (-) True G236596
TU268329 lncRNA upstream 38611 11005057 ~ 11005559 (-) True G236591
TU268340 lncRNA upstream 52229 11018675 ~ 11032856 (-) True G236601
TU268372 lncRNA upstream 169101 11135547 ~ 11137222 (-) True G236633
TU268402 lncRNA upstream 186294 11152740 ~ 11153017 (-) True G236662
CI01000054_10949424_10950271.mRNA mRNA downstream 12842 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_10910820_10938477.mRNA mRNA downstream 25821 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10872970_10881017.mRNA mRNA downstream 82803 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10817235_10819181.mRNA mRNA downstream 144936 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_10645438_10672411.mRNA mRNA downstream 291617 10645142 ~ 10672681 (-) True CI01000054_10645438_10672411
CI01000054_11097818_11099299.mRNA mRNA upstream 131262 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_11184013_11193925.mRNA mRNA upstream 217284 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11209592_11214961.mRNA mRNA upstream 241603 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11222307_11238293.mRNA mRNA upstream 255725 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11354957_11355910.mRNA mRNA upstream 388194 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
TU268162 other downstream 83082 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 144953 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 144953 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 144953 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1097240 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268494 other upstream 318748 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 318748 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 812444 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 813011 11782349 ~ 11782484 (-) True G237082

Expression Profile