RNA id: TU268329


Basic Information

Item Value
RNA id TU268329
length 503
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G236591
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11005057 ~ 11005559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTATACAGACACAGACAGCGGGCCTACTGTATAACCTTATGCAAGCTCAGCAGCCTGTGCCAAGCACTATGGCAAGACCACAGGAAAACAATCAAAGCTAAAAAGCTTTAAAAATCATTTTCTTGACATTAGAATTGGCTACAGGCAAAGAGTAATTGCGATGTGGGTGAAGTGCTTCCAAAACAGTTGTTGATTAGAAACAGTTTTCTTCCTTTGTCCTCGGTCAATATTTTTCTCCCTCAAAACAAATGATGCCCTCCATCCACCTCCATTCACACACGTATCTGGTTTGTACAGTCACAACAACAAAATGGTTTATTGCCATTGTGTGTAAACAGACAGCAGGTCAGCCTGACATATTGACCTGATCTACAAACACATTTCCCAGGCCAGCAATGTGCTTTTAAACTGCCAGTGCTGGTTTTAATAGCAGTCGATGGCTTTATCAACAGGCTGTGTGCTAATTTGGCTCCAGAATTAGACATGTATGGAATGGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268335 lncRNA downstream 3475 11001327 ~ 11001582 (-) True G236596
TU268290 lncRNA downstream 38611 10964298 ~ 10966446 (-) False G236570
TU268291 lncRNA downstream 38611 10964298 ~ 10966446 (-) False G236570
TU268292 lncRNA downstream 38611 10964298 ~ 10966446 (-) False G236570
TU268298 lncRNA downstream 38611 10964298 ~ 10966446 (-) True G236570
TU268340 lncRNA upstream 13116 11018675 ~ 11032856 (-) True G236601
TU268372 lncRNA upstream 129988 11135547 ~ 11137222 (-) True G236633
TU268402 lncRNA upstream 147181 11152740 ~ 11153017 (-) True G236662
TU268403 lncRNA upstream 147574 11153133 ~ 11153374 (-) True G236663
TU268404 lncRNA upstream 153012 11158571 ~ 11158804 (-) True G236664
CI01000054_10949424_10950271.mRNA mRNA downstream 53601 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_10910820_10938477.mRNA mRNA downstream 66580 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10872970_10881017.mRNA mRNA downstream 123562 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10817235_10819181.mRNA mRNA downstream 185695 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_10645438_10672411.mRNA mRNA downstream 332376 10645142 ~ 10672681 (-) True CI01000054_10645438_10672411
CI01000054_11097818_11099299.mRNA mRNA upstream 92149 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_11184013_11193925.mRNA mRNA upstream 178171 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11209592_11214961.mRNA mRNA upstream 202490 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11222307_11238293.mRNA mRNA upstream 216612 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11354957_11355910.mRNA mRNA upstream 349081 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
TU268162 other downstream 123841 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 185712 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 185712 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 185712 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1137999 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268494 other upstream 279635 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 279635 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 773331 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 773898 11782349 ~ 11782484 (-) True G237082

Expression Profile