RNA id: TU268406


Basic Information

Item Value
RNA id TU268406
length 321
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G236666
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11167624 ~ 11167944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGTCTGTTGTAGTCCTTAAACAGAATTCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGCGTTGTAACTTTGCAGATGTTGTTTGTGCTCTAACAGCAACATTACACACTAACTAAAGTTAAAAAAAGTGAAATCTTAATCAACCACGTCTTTAAAAGAACTTTGTGTTTCTGGACACTTAATTGCATGTAAGTTGCAATTAAAAGTAAATGCATTATTGTTTAAATTTATATTAAATGCAGTTATCTGAAGTGTCCTGGAACGTGCAGCATTATTCAATGTGTTGACATTATTTCCACTGAAACAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268404 lncRNA downstream 8820 11158571 ~ 11158804 (-) True G236664
TU268403 lncRNA downstream 14250 11153133 ~ 11153374 (-) True G236663
TU268402 lncRNA downstream 14607 11152740 ~ 11153017 (-) True G236662
TU268372 lncRNA downstream 30402 11135547 ~ 11137222 (-) True G236633
TU268340 lncRNA downstream 134768 11018675 ~ 11032856 (-) True G236601
TU268380 lncRNA upstream 3798 11171742 ~ 11172107 (-) True G236640
TU268407 lncRNA upstream 5295 11173239 ~ 11173471 (-) True G236667
TU268409 lncRNA upstream 6359 11174303 ~ 11174791 (-) True G236669
TU268384 lncRNA upstream 10297 11178241 ~ 11179119 (-) True G236644
TU268412 lncRNA upstream 36775 11204719 ~ 11205657 (-) True G236672
CI01000054_11097818_11099299.mRNA mRNA downstream 68290 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_10949424_10950271.mRNA mRNA downstream 216168 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_10910820_10938477.mRNA mRNA downstream 229147 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10872970_10881017.mRNA mRNA downstream 286129 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10817235_10819181.mRNA mRNA downstream 348262 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_11184013_11193925.mRNA mRNA upstream 15786 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11209592_11214961.mRNA mRNA upstream 40105 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11222307_11238293.mRNA mRNA upstream 54227 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11354957_11355910.mRNA mRNA upstream 186696 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
CI01000054_11365718_11380961.mRNA mRNA upstream 197076 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
TU268162 other downstream 286408 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 348279 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 348279 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 348279 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1300566 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268494 other upstream 117250 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 117250 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 610946 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 611513 11782349 ~ 11782484 (-) True G237082

Expression Profile