RNA id: TU268409


Basic Information

Item Value
RNA id TU268409
length 489
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G236669
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11174303 ~ 11174791 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTCGTCAACATGTAGAAAGTGATTCTTCCCAAAGAACTGGCTCGAAGAAAACAATCCGTAGACTGATAACAGAGCATTCAGAGAATGAACAGCTCAGCTCCGAAGTGAAAAGCTGGTATGCGCTTGGACCTGCTGCTCATTTATACCTGCGCTGTGAGGCAGAGCAGCTGAATGCAATAATCACATGCCAATGTGCATTGGCTCGTTTAGTTTACACTCAAAGTAGATTGACATCGAAAGTGACCGACTGAAAGGGAACTATAATCTGAAAGTAACAAAGATTTGAAGTGTTCTGGATTTGAGACAGACCTGTAATAAGCTCCAGCCCTCCTCTCTGTAAGATTATAGACATCATAAGTATGAGTTGTGGGGCACTTTCAGAAAATGCCTCAAACATACGAAGCATCTGAAGGTCATGGATCAGGTACAGAGCAACACCCTCTGTGTTTCTTCTTTGTTGAAAAAAAAGTGTCGTGGAAATCTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268407 lncRNA downstream 832 11173239 ~ 11173471 (-) True G236667
TU268380 lncRNA downstream 2196 11171742 ~ 11172107 (-) True G236640
TU268406 lncRNA downstream 6359 11167624 ~ 11167944 (-) True G236666
TU268404 lncRNA downstream 15499 11158571 ~ 11158804 (-) True G236664
TU268403 lncRNA downstream 20929 11153133 ~ 11153374 (-) True G236663
TU268384 lncRNA upstream 3450 11178241 ~ 11179119 (-) True G236644
TU268412 lncRNA upstream 29928 11204719 ~ 11205657 (-) True G236672
TU268386 lncRNA upstream 42058 11216849 ~ 11221139 (-) True G236646
TU268416 lncRNA upstream 50072 11224863 ~ 11225911 (-) True G236676
TU268429 lncRNA upstream 69841 11244632 ~ 11244971 (-) True G236689
CI01000054_11097818_11099299.mRNA mRNA downstream 74969 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_10949424_10950271.mRNA mRNA downstream 222847 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_10910820_10938477.mRNA mRNA downstream 235826 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10872970_10881017.mRNA mRNA downstream 292808 10872815 ~ 10881495 (-) False CI01000054_10872970_10881017
CI01000054_10817235_10819181.mRNA mRNA downstream 354941 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_11184013_11193925.mRNA mRNA upstream 8939 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11209592_11214961.mRNA mRNA upstream 33258 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11222307_11238293.mRNA mRNA upstream 47380 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11354957_11355910.mRNA mRNA upstream 179849 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
CI01000054_11365718_11380961.mRNA mRNA upstream 190229 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
TU268162 other downstream 293087 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 354958 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 354958 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 354958 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1307245 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268494 other upstream 110403 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 110403 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 604099 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 604666 11782349 ~ 11782484 (-) True G237082

Expression Profile