RNA id: TU267919


Basic Information

Item Value
RNA id TU267919
length 206
lncRNA type intronic
GC content 0.38
exon number 2
gene id G236249
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11226726 ~ 11233234 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAGCTTTATAATGGCAGTGAACGGGATCAATGAGTATGAAGCTGAAGAAAGTGCCTCCATCCATATCCATAAACGTACTCCACATGGCTCCGGGGGGTTAATAAAGGCCTTCTGAAGCGAAGCGATGCGTTTATGTAAAAAAAAAAAAAAAAAAAATATCCATATTTAACAAGTTATGAAGTAAAATATCTAGCTTCCGCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267890 lncRNA upstream 75110 11150613 ~ 11151616 (+) True G236220
TU267840 lncRNA upstream 151361 11014131 ~ 11075365 (+) True G236176
TU267861 lncRNA upstream 277038 10926963 ~ 10949688 (+) False G236195
TU267862 lncRNA upstream 277038 10941610 ~ 10949688 (+) True G236195
TU267841 lncRNA upstream 343600 10882678 ~ 10883126 (+) True CI01000054_10884460_10894800
TU267927 lncRNA downstream 10829 11244063 ~ 11244283 (+) True G236257
TU267892 lncRNA downstream 44177 11277411 ~ 11279005 (+) True G236222
TU267952 lncRNA downstream 62915 11296149 ~ 11297001 (+) True G236281
TU267982 lncRNA downstream 135861 11369095 ~ 11373596 (+) True G236305
TU268044 lncRNA downstream 274191 11507425 ~ 11507904 (+) True G236362
CI01000054_11171795_11178974.mRNA mRNA upstream 47617 11171731 ~ 11179109 (+) True CI01000054_11171795_11178974
CI01000054_11162176_11165636.mRNA mRNA upstream 60899 11160059 ~ 11165827 (+) True CI01000054_11162176_11165636
CI01000054_11154206_11157480.mRNA mRNA upstream 68896 11154129 ~ 11157830 (+) True CI01000054_11154206_11157480
CI01000054_11142387_11149427.mRNA mRNA upstream 76603 11141982 ~ 11150123 (+) False CI01000054_11142387_11149427
CI01000054_11126599_11136327.mRNA mRNA upstream 89484 11124621 ~ 11137242 (+) True CI01000054_11126599_11136327
CI01000054_11280613_11285395.mRNA mRNA downstream 47379 11280613 ~ 11285395 (+) True CI01000054_11280613_11285395
CI01000054_11289604_11337266.mRNA mRNA downstream 56370 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11409512_11412290.mRNA mRNA downstream 176020 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11536181_11537063.mRNA mRNA downstream 301523 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11564820_11568338.mRNA mRNA downstream 331586 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
TU267167 other upstream 834348 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2897138 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2921777 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3616833 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 4338223 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 331742 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 399742 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 414745 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 414745 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 580454 11813688 ~ 11816475 (+) True G236874

Expression Profile