RNA id: TU268437


Basic Information

Item Value
RNA id TU268437
length 957
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G236697
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11277751 ~ 11279011 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAGAACGGCTTTAATTTGCAGAAACTTTGAGTTTATTACAAGAGGTAAAAAACAACCAATTACACCAACCAATATTTCCAATTATGTACTTGTATGGCAAATAGCCACGTAATAAGCAGGATAATATACAATCAACCAGTTGTTCATGCCACTATATCTCTGACTATTCTTCTCATGCTACCAAACACAAATACACAGAACCAACAATGGTTGCTTTCATTTATTTAAAAAAAAAAAAAAAAAAAAAAAACCTTTAGTTGATTATTTTAATTCAAAAACAGTTTTAATCTAATCAAGACATTCCTCAATATTTCAACCAATAACACATTCAGCAACAACAAATAAAAATGTTAAATGGCAATCCAGTATGTAATATTCACTACTGTCATTAGATCTGGCCTTACTCAAAATTAACATTTGGTGATTGACACCTCAACAAAGTAGGAACTTCTACTTCATTCTTGCAGCAGTTGTGACAAAAATGCATCTCTTAGGTGGCATTCATACATATCATTTAAGGTGGCAAAAGGAATGTTCTATGAAGACTTCAAGGAAATGCCATTATGCTGCAAGAGAAATATCATTTCAGTACATTTCACAAGAAAAGGTGACATTATGCAGAGACTGAGACCCTTGAGCACATGTTGGAAACATATCTTGTCTGGGGTTTCTATAACCATGCTGTAAGGGACAAACAACATGGCCTCAAACCACCCCATGTCCATCTAGCAGACATACAGGAAAGGAGAGTCACGTCAGACTCAACCTTGCTGGATAGGCTGCACAACAACTCCATCTTAGTGCTTTATACAAAACATTAATTACCAACCTAAATTGCATAAACGTTGTGTTTAAAAAGTTAATACCTACTTCTAAAAGCAGAGAATTGTACACAAATGTTGAAATAGATTTAACTAATAAACGCATCTGAACTTATCCACACGTGGACCCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268441 lncRNA downstream 19001 11258492 ~ 11258750 (-) True G236701
TU268435 lncRNA downstream 24002 11253374 ~ 11253749 (-) True G236695
TU268429 lncRNA downstream 32780 11244632 ~ 11244971 (-) True G236689
TU268416 lncRNA downstream 51840 11224863 ~ 11225911 (-) True G236676
TU268386 lncRNA downstream 56612 11216849 ~ 11221139 (-) True G236646
TU268500 lncRNA upstream 10406 11289417 ~ 11294006 (-) True G236748
TU268493 lncRNA upstream 28639 11307650 ~ 11312025 (-) True G236747
TU268534 lncRNA upstream 55695 11334706 ~ 11432931 (-) True G236779
TU268471 lncRNA upstream 83284 11423835 ~ 11425467 (-) True G236725
TU268457 lncRNA upstream 130208 11409219 ~ 11413185 (-) False G236715
CI01000054_11222307_11238293.mRNA mRNA downstream 38001 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11209592_11214961.mRNA mRNA downstream 62638 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11184013_11193925.mRNA mRNA downstream 83826 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11097818_11099299.mRNA mRNA downstream 178417 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_10949424_10950271.mRNA mRNA downstream 326295 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_11354957_11355910.mRNA mRNA upstream 75629 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
CI01000054_11365718_11380961.mRNA mRNA upstream 86009 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
CI01000054_11387319_11406159.mRNA mRNA upstream 108308 11387319 ~ 11407070 (-) True CI01000054_11387319_11406159
CI01000054_11441495_11447523.mRNA mRNA upstream 162419 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11464968_11474671.mRNA mRNA upstream 185383 11464394 ~ 11474702 (-) True CI01000054_11464968_11474671
TU268162 other downstream 396535 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 458406 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 458406 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 458406 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1410693 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268494 other upstream 6183 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 6183 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 499879 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 500446 11782349 ~ 11782484 (-) True G237082

Expression Profile