RNA id: TU268495



Basic Information


Item Value
RNA id TU268495
length 1717
RNA type TUCP
GC content 0.46
exon number 11
gene id G236748
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11285194 ~ 11295784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAAGTCAGGTAACAACCAGTCTGGTTAAATGAGGTTGCAGTTTTGTTCCATAATTCATGACAGGCCTAAAACTTTATGCTTATGTGATATGATTGAGGATTGCTGAGGCAAGAAGGAATGGATGACTGTTCAGAGTGCTTACTTTCCGGGACGTGTAGTGAGGATGCTGGCCGAGCTTTTTGTTCATGCTGTCCAGGCAGACGGTATCTGTGACTTTCCCTGCAGTGAGACAGGCTTCATCCAGGACCGAGATGATCCCCTTATGAGGCTGCTCCACTAAGTCCACTATGATCTGATTGTTAAAGTATTCAATATGTTGCCATGTGATACCCTCTCTCTGGTACTCGTCCTGCTCCTGACGTAGAATAAGCTCGATGAAGAGCTGCTGTAGCTTCTCGTTGCAGTAGTTAATGCAAAACTGCTCAAAGCTGTTGTTGTCAAATATCTCAAAGCCATAGATGTCCAGCACACCTATAACAGTGTTTTTGCCATGCAGGGCAGGATTGTAGTCCTTGACTTCAATAACAGCATTGATACGACCCACTATCCACGCAAACAATCTCTCATATAAAGCCTTGGCAAAAGCGTCTTTTCCATAGCTAGCTTCCTGCTCGTTGTGTCCCTTTTCGATTACCTCACCACCCCCGGTTGCCACTGTGCGGTACAGAAGTGCTTTTGTGACATTCTCAGACTCTGTGGACGTCAACTCAGAAATGTGCTTCAATGTGTCTTCTCCGACAAGTACGACATGTTCACCATCAGTAGTAAACTGAAGGTTACCCAGGTGCAGGATGGTACCAAGGATCTTGTAGATGGAGCTGATCTCTTCGGCAGTGAAGCCAATCACTTTTAGTGCTGCCATCACAGCTTTGTGACATAAGGAGTCGTTATTTGACGCAAGTGTGACAGAGGCTCCTTGACTGGTGTAGGTATATCCTGCGGGATCTCTCTGCAGATATAAGGACTTCAGCAAATCATCAGAACCTCCCCGTAACACCTGATAAAATGAGTGGAAGTTTCTCTCTCCCTCATGCTGTTGAACAACTCTTGACTTCTCCAGCAGGTAGTTGTTGATGTGTCCTCCTGTGGGGTCTCCATTAAAGTTGAAGTTGATGTCCATGTATTTCCCGAAGCGGCTAGAGTTGTCATTGCGGTTGGTCTTTGCATTTCCAAAGGCCTCTAACACACAGTTGGATTTCAGGAGTACGTTCTTCACACTCTCAACCTCTGCCCTCTGGTTAGGGTTGGTAATAGCTGCAATGTACTGCATAATGTACTTGCTTGCCTCAGTCTTGCCTGCTCCACTCTCACCTGAAATGACGATGCATGTGTCTTTGGCTCGTCTCTTCATAGCTTTATAAGCGGCATCTGCAACTGCATACAGGTGAGGTGGATTCTCATATAGTTCTCTGCCCCTGTAGTCCTCAATGACCTCCTTCCCATAGATATCTAACTGTCTGTACGGATTGACTGACACCACTACTTCTCCAATGAAAGTGTAGATACGGCCCTTCTCAAACCTTCAAATTCTCCATAAACTGCTCCATAGTGACCTCATCTAGAAGCACAAAGTCTGACTTTCCGAACTCCAAGCCCTCCAGCTCCGCCATGCCTGCAGGAGTCTATTTGAAGGACAAATGAATGGAGAGAAAAGTGGAAGGTGATGAGAAAGGCACAGAAACCAAGCATTGACTGCCGTCTTCTTAAAGCCGGTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268437 lncRNA downstream 6183 11277751 ~ 11279011 (-) True G236697
TU268441 lncRNA downstream 26444 11258492 ~ 11258750 (-) True G236701
TU268435 lncRNA downstream 31445 11253374 ~ 11253749 (-) True G236695
TU268429 lncRNA downstream 40223 11244632 ~ 11244971 (-) True G236689
TU268416 lncRNA downstream 59283 11224863 ~ 11225911 (-) True G236676
TU268493 lncRNA upstream 11866 11307650 ~ 11312025 (-) True G236747
TU268534 lncRNA upstream 38922 11334706 ~ 11432931 (-) True G236779
TU268471 lncRNA upstream 66511 11423835 ~ 11425467 (-) True G236725
TU268457 lncRNA upstream 113435 11409219 ~ 11413185 (-) False G236715
TU268459 lncRNA upstream 113435 11409219 ~ 11413185 (-) False G236715
CI01000054_11222307_11238293.mRNA mRNA downstream 45444 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11209592_11214961.mRNA mRNA downstream 70081 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11184013_11193925.mRNA mRNA downstream 91269 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11097818_11099299.mRNA mRNA downstream 185860 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_10949424_10950271.mRNA mRNA downstream 333738 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_11354957_11355910.mRNA mRNA upstream 58856 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
CI01000054_11365718_11380961.mRNA mRNA upstream 69236 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
CI01000054_11387319_11406159.mRNA mRNA upstream 91535 11387319 ~ 11407070 (-) True CI01000054_11387319_11406159
CI01000054_11441495_11447523.mRNA mRNA upstream 145646 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11464968_11474671.mRNA mRNA upstream 168610 11464394 ~ 11474702 (-) True CI01000054_11464968_11474671
TU268162 other downstream 403978 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 465849 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 465849 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 465849 10803871 ~ 10816162 (-) True G236458
TU267308 other downstream 1418136 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268938 other upstream 483106 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 483673 11782349 ~ 11782484 (-) True G237082

Expression Profile