RNA id: TU267952



Basic Information


Item Value
RNA id TU267952
length 586
lncRNA type intronic
GC content 0.33
exon number 2
gene id G236281
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11296149 ~ 11297001 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCAGCACTCTTTCTGAAACAAGTGTAACTGAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTGAATATTAATATTATAAAGCGATGAGAATATTTCTGGTGCGCCAAAAAACAAAACAAAATAACGACTTATATAGTGATGGCCGATTTCAAAATACTGCTCCAGGAAGCTTCGGAGCATTTTGAATCAGCGGTTCGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTGGCGGTTTGACACGCGATCCGAATCATGATTCGATACGCTGATTCATAACGCTCCGAAGCTTAGTTCACCCAAAAATGAAAATTCTGAATATGAAAATGAAATGAAAAATGAAAAATATGAATTCTGAAAATGAATAAACTAACCCTTTAAAGACAAAATGAGAATTCACAATTTAACTTTCATAATGTGACAGAAACAAAAATAATATTCAGCTGTAAAAATGTTTATATATAAAGGGGATATATAAAGACAGAAACTGACGTGGAAATGTATGCCATCTGAAGATGTGTAGGACTACAAACTTTTTGGTGCTCATATACAAATTCAACATTGTTTATGCAAATGTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU267892 lncRNA upstream 17144 11277411 ~ 11279005 (+) True G236222
TU267927 lncRNA upstream 51866 11244063 ~ 11244283 (+) True G236257
TU267919 lncRNA upstream 62915 11226726 ~ 11233234 (+) True G236249
TU267890 lncRNA upstream 144533 11150613 ~ 11151616 (+) True G236220
TU267840 lncRNA upstream 220784 11014131 ~ 11075365 (+) True G236176
TU267982 lncRNA downstream 72094 11369095 ~ 11373596 (+) True G236305
TU268044 lncRNA downstream 210424 11507425 ~ 11507904 (+) True G236362
TU268060 lncRNA downstream 252603 11549604 ~ 11550696 (+) True G236373
TU268583 lncRNA downstream 300265 11597266 ~ 11597518 (+) True G236822
TU268601 lncRNA downstream 310747 11607748 ~ 11608390 (+) True CI01000054_11600741_11608257
CI01000054_11280613_11285395.mRNA mRNA upstream 10754 11280613 ~ 11285395 (+) True CI01000054_11280613_11285395
CI01000054_11171795_11178974.mRNA mRNA upstream 117040 11171731 ~ 11179109 (+) True CI01000054_11171795_11178974
CI01000054_11162176_11165636.mRNA mRNA upstream 130322 11160059 ~ 11165827 (+) True CI01000054_11162176_11165636
CI01000054_11154206_11157480.mRNA mRNA upstream 138319 11154129 ~ 11157830 (+) True CI01000054_11154206_11157480
CI01000054_11142387_11149427.mRNA mRNA upstream 146026 11141982 ~ 11150123 (+) False CI01000054_11142387_11149427
CI01000054_11409512_11412290.mRNA mRNA downstream 112253 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11536181_11537063.mRNA mRNA downstream 237756 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11564820_11568338.mRNA mRNA downstream 267819 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11600741_11608257.mRNA mRNA downstream 303505 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11633235_11635069.mRNA mRNA downstream 335958 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
TU267167 other upstream 903771 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2966561 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2991200 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3686256 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 4407646 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 267975 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 335975 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 350978 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 350978 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 516687 11813688 ~ 11816475 (+) True G236874

Expression Profile