RNA id: TU268534


Basic Information

Item Value
RNA id TU268534
length 349
lncRNA type read_through
GC content 0.41
exon number 2
gene id G236779
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11334706 ~ 11432931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCCAACTCCCCTAGAGTTAAACAGTTGAGTTTTACCGTTTTCGAATCCATTCAGCCGATCTCCGGGTCTGGCGGTACCACTTTTAGCATAGCTTAGCATAGTTCATTGAATCTGATTAGACCGTTAGCATCTCGCTCAAAAATGACCAAAGAGTTTAGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACTAAGACCGACAGAAAATGAAAAGTAGGCCGATATGGCTAGGAACTATACTCTCATTCCGGCGTAATAATCAAGGAACTTTGCTGCCGTACCATGGGTGCAGCAGCCTCAATGATATTACGTCATTTTTGAGCGAGATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268445 lncRNA downstream 319 11264317 ~ 11334387 (-) True G236705
TU268493 lncRNA downstream 22681 11307650 ~ 11312025 (-) True G236747
TU268500 lncRNA downstream 40700 11289417 ~ 11294006 (-) True G236748
TU268437 lncRNA downstream 55695 11277751 ~ 11279011 (-) True G236697
TU268441 lncRNA downstream 75956 11258492 ~ 11258750 (-) True G236701
TU268480 lncRNA upstream 73610 11506541 ~ 11507903 (-) True G236734
TU268474 lncRNA upstream 92209 11525140 ~ 11527129 (-) True G236728
TU268477 lncRNA upstream 95479 11528410 ~ 11529232 (-) True G236731
TU268561 lncRNA upstream 107956 11540887 ~ 11541109 (-) True G236806
TU268562 lncRNA upstream 110323 11543254 ~ 11543538 (-) True G236807
CI01000054_11222307_11238293.mRNA mRNA downstream 94956 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11209592_11214961.mRNA mRNA downstream 119593 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
CI01000054_11184013_11193925.mRNA mRNA downstream 140781 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11097818_11099299.mRNA mRNA downstream 235372 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_10949424_10950271.mRNA mRNA downstream 383250 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_11441495_11447523.mRNA mRNA upstream 8499 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11464968_11474671.mRNA mRNA upstream 31463 11464394 ~ 11474702 (-) True CI01000054_11464968_11474671
CI01000054_11480381_11493272.mRNA mRNA upstream 45853 11478784 ~ 11493272 (-) True CI01000054_11480381_11493272
CI01000054_11594619_11599264.mRNA mRNA upstream 161655 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11699420_11703409.mRNA mRNA upstream 266035 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
TU268495 other downstream 38922 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 43466 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 453490 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268159 other downstream 515361 10803871 ~ 10815565 (-) False G236458
TU268938 other upstream 345959 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 346526 11782349 ~ 11782484 (-) True G237082

Expression Profile