RNA id: TU268562


Basic Information

Item Value
RNA id TU268562
length 285
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G236807
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11543254 ~ 11543538 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAAAATATCTTTATTTTGGACCAAAAGGAGACATAATTAAACAATAATGTAGATTATTTATATAATTTTGACTCAACAGCTCTATAAATACAATTGCAAGATGCTTTTTCACCCACAGAGCAAAAGAAAGCAAATTCAGAGAATAAAGTGTAAGCATCTGGATGAACCGGACCTTCATCATCATAAACCATTAGAAGGATGCAAATTTATTTGAATTAACTTTCATTTCAATAATGGTTTGGCATACACAAACATTCTTTTCAATTTTTGATCTCGATTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268561 lncRNA downstream 2145 11540887 ~ 11541109 (-) True G236806
TU268477 lncRNA downstream 14022 11528410 ~ 11529232 (-) True G236731
TU268474 lncRNA downstream 16125 11525140 ~ 11527129 (-) True G236728
TU268480 lncRNA downstream 35351 11506541 ~ 11507903 (-) True G236734
TU268459 lncRNA downstream 130069 11409219 ~ 11413185 (-) False G236715
TU268563 lncRNA upstream 1656 11545194 ~ 11545422 (-) True G236808
TU268568 lncRNA upstream 15853 11559391 ~ 11559637 (-) True G236810
TU268573 lncRNA upstream 34834 11578372 ~ 11578698 (-) True G236815
TU268986 lncRNA upstream 71005 11614543 ~ 11614907 (-) True G237125
TU268893 lncRNA upstream 239062 11782600 ~ 11789638 (-) True G237079
CI01000054_11480381_11493272.mRNA mRNA downstream 49982 11478784 ~ 11493272 (-) True CI01000054_11480381_11493272
CI01000054_11464968_11474671.mRNA mRNA downstream 68552 11464394 ~ 11474702 (-) True CI01000054_11464968_11474671
CI01000054_11441495_11447523.mRNA mRNA downstream 95731 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11387319_11406159.mRNA mRNA downstream 136184 11387319 ~ 11407070 (-) True CI01000054_11387319_11406159
CI01000054_11365718_11380961.mRNA mRNA downstream 162293 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
CI01000054_11594619_11599264.mRNA mRNA upstream 51048 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11699420_11703409.mRNA mRNA upstream 155428 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
CI01000054_11705281_11711296.mRNA mRNA upstream 161043 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11724484_11731711.mRNA mRNA upstream 180457 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
CI01000054_11758803_11774872.mRNA mRNA upstream 214759 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
TU268495 other downstream 247470 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 252014 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 662038 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268159 other downstream 723909 10803871 ~ 10815565 (-) False G236458
TU268938 other upstream 235352 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 235919 11782349 ~ 11782484 (-) True G237082

Expression Profile