RNA id: TU268573


Basic Information

Item Value
RNA id TU268573
length 327
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G236815
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11578372 ~ 11578698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAAATACGTCCACAGAGCTGCCCTGTGGAGGAAAGCAGATCAACTGTTTGTGTGTTTTGGACCGCATAACAGGGGTCGCCCTGCGTCCAAACATATGGTAAGCAAGTGGATAGTCAAGGCTATTTCACTTGCATACGAGGTCTCTGGTCAGCAGTGTCCTTTAGCTGTCAGAGCTCATTCAATCAGGAGTATGGCGTCCTCCAAGGCGTTAATTTCGTGAGTTTCCCTTAAAGAAGTCTGCGATGCAGCCGGTTGGTCCTCGCCTCTCACTTTTGTGAGGTACTATGACCTTGACCTGGACGCGGCTCCAGGGTCTGCAGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268568 lncRNA downstream 18735 11559391 ~ 11559637 (-) True G236810
TU268563 lncRNA downstream 32950 11545194 ~ 11545422 (-) True G236808
TU268562 lncRNA downstream 34834 11543254 ~ 11543538 (-) True G236807
TU268561 lncRNA downstream 37263 11540887 ~ 11541109 (-) True G236806
TU268477 lncRNA downstream 49140 11528410 ~ 11529232 (-) True G236731
TU268986 lncRNA upstream 35845 11614543 ~ 11614907 (-) True G237125
TU268893 lncRNA upstream 203902 11782600 ~ 11789638 (-) True G237079
TU268984 lncRNA upstream 323352 11902050 ~ 11903026 (-) True G237123
TU268947 lncRNA upstream 330735 11909433 ~ 11911150 (-) True G237087
TU268962 lncRNA upstream 378362 11957060 ~ 11958114 (-) True G237101
CI01000054_11480381_11493272.mRNA mRNA downstream 85100 11478784 ~ 11493272 (-) True CI01000054_11480381_11493272
CI01000054_11464968_11474671.mRNA mRNA downstream 103670 11464394 ~ 11474702 (-) True CI01000054_11464968_11474671
CI01000054_11441495_11447523.mRNA mRNA downstream 130849 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11387319_11406159.mRNA mRNA downstream 171302 11387319 ~ 11407070 (-) True CI01000054_11387319_11406159
CI01000054_11365718_11380961.mRNA mRNA downstream 197411 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
CI01000054_11594619_11599264.mRNA mRNA upstream 15888 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11699420_11703409.mRNA mRNA upstream 120268 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
CI01000054_11705281_11711296.mRNA mRNA upstream 125883 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11724484_11731711.mRNA mRNA upstream 145297 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
CI01000054_11758803_11774872.mRNA mRNA upstream 179599 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
TU268495 other downstream 282588 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 287132 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 697156 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268159 other downstream 759027 10803871 ~ 10815565 (-) False G236458
TU268938 other upstream 200192 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 200759 11782349 ~ 11782484 (-) True G237082

Expression Profile