RNA id: TU268583


Basic Information

Item Value
RNA id TU268583
length 253
lncRNA type intronic
GC content 0.36
exon number 1
gene id G236822
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11597266 ~ 11597518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAAATTCAGTATTGATTCATTCCGTTGTAAGAATCAATAGTTATTAATTTAGTTAATTTATCTATATCAGCACTGAAGTAAACAGTGATGTCATCATCCAGCTCAGTTCAGTTCGCATAAAATGGTGTCAATGCAGGCAGATCAAAACACTGTTGAATATCAAATGTCAAGTGTCCCCAACTTATTACTAACATTAACTGATGGTAAAGAGAGAGCGCATGCACTTGAGTTGCATGCTCTTGATGGCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268060 lncRNA upstream 46570 11549604 ~ 11550696 (+) True G236373
TU268044 lncRNA upstream 89362 11507425 ~ 11507904 (+) True G236362
TU267982 lncRNA upstream 223670 11369095 ~ 11373596 (+) True G236305
TU267952 lncRNA upstream 300265 11296149 ~ 11297001 (+) True G236281
TU267892 lncRNA upstream 318261 11277411 ~ 11279005 (+) True G236222
TU268601 lncRNA downstream 10230 11607748 ~ 11608390 (+) True CI01000054_11600741_11608257
TU268613 lncRNA downstream 17119 11614637 ~ 11614917 (+) True G236848
TU268614 lncRNA downstream 19309 11616827 ~ 11617146 (+) True G236849
TU268616 lncRNA downstream 25087 11622605 ~ 11622853 (+) True G236851
TU268617 lncRNA downstream 30768 11628286 ~ 11628516 (+) True G236852
CI01000054_11564820_11568338.mRNA mRNA upstream 28816 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11536181_11537063.mRNA mRNA upstream 60102 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11409512_11412290.mRNA mRNA upstream 184135 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11289604_11337266.mRNA mRNA upstream 259886 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11280613_11285395.mRNA mRNA upstream 311871 11280613 ~ 11285395 (+) True CI01000054_11280613_11285395
CI01000054_11600741_11608257.mRNA mRNA downstream 2988 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11633235_11635069.mRNA mRNA downstream 35441 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11637464_11637950.mRNA mRNA downstream 39815 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11648262_11648786.mRNA mRNA downstream 50441 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11659093_11663413.mRNA mRNA downstream 61575 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
TU267998 other upstream 28267 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1204888 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 3267678 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 3292317 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3987373 7567523 ~ 7609893 (+) True G233024
TU268596 other downstream 35458 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 50461 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 50461 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 216170 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1287384 12884902 ~ 12886503 (+) False G237398

Expression Profile