RNA id: TU268613


Basic Information

Item Value
RNA id TU268613
length 281
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G236848
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11614637 ~ 11614917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGGGCAGAGGATCACCAATTCCCCCAATGCTGCGGCGAAAAATAGTGGAGCAATATCAGAAAGGAGTTTCTCAGAGAAAAATTGCAAAGAGTTTGAAGTTATCATCATCTACAGTGCATAATATCATCCAAAGTTTCAGGGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCGTACTGGATGCCTGTGATTTTTGGGCCCTTAGATGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGAGCTCAGGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268601 lncRNA upstream 6247 11607748 ~ 11608390 (+) True CI01000054_11600741_11608257
TU268583 lncRNA upstream 17119 11597266 ~ 11597518 (+) True G236822
TU268060 lncRNA upstream 63941 11549604 ~ 11550696 (+) True G236373
TU268044 lncRNA upstream 106733 11507425 ~ 11507904 (+) True G236362
TU267982 lncRNA upstream 241041 11369095 ~ 11373596 (+) True G236305
TU268614 lncRNA downstream 1910 11616827 ~ 11617146 (+) True G236849
TU268616 lncRNA downstream 7688 11622605 ~ 11622853 (+) True G236851
TU268617 lncRNA downstream 13369 11628286 ~ 11628516 (+) True G236852
TU268618 lncRNA downstream 13790 11628707 ~ 11629027 (+) True G236853
TU268622 lncRNA downstream 24987 11639904 ~ 11640550 (+) True G236857
CI01000054_11600741_11608257.mRNA mRNA upstream 6275 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11564820_11568338.mRNA mRNA upstream 46187 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11536181_11537063.mRNA mRNA upstream 77473 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11409512_11412290.mRNA mRNA upstream 201506 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11289604_11337266.mRNA mRNA upstream 277257 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11633235_11635069.mRNA mRNA downstream 18042 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11637464_11637950.mRNA mRNA downstream 22416 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11648262_11648786.mRNA mRNA downstream 33042 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11659093_11663413.mRNA mRNA downstream 44176 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11666236_11693431.mRNA mRNA downstream 51319 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
TU267998 other upstream 45638 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1222259 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 3285049 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 3309688 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 4004744 7567523 ~ 7609893 (+) True G233024
TU268596 other downstream 18059 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 33062 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 33062 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 198771 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1269985 12884902 ~ 12886503 (+) False G237398

Expression Profile