RNA id: TCONS_00018896


Basic Information

Item Value
RNA id TCONS_00018896
length 4346
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_008351
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12004803 ~ 12009399 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatactttatatataagAGCAAAATTTGTATTGGGGGAGTACCATACTGTCATACATCTAGGCAGAGATTGTCGAAATATAATGAGAATtatatttaacttgtttttttacaataaacattttaaaaatacaaataagtaAACCTACTAGAAGATGCAACATGACCAGAAAGAGTTCATTAATCCTTATCTCAACTTTGAAGTGATGAATCAGAATTTCACCTTTCTGTTTTATTCAATGAAAAGTTATATAGTAGTATAAGCAGCCTTTTTTGCTtcagtataaaaataataataaaaaatctggtCACAGATATAATAATGCTGGTAAAGGACATAATCAGTCTATAATCTGAAAGGCCTCTCTCAGGCTCTCTAGTGCCTCATTCTGAGTAATTTTCCCCCATGCTTCAGGCAATTTTGCAGGTGCACAAAGATATTCCTGAGCAAACCTATCATTGTACCTCATGAACACGTATCTCCAGTAGGCGGCAGCCCCATTATTACCAGGGTCTTCTGGGTAAATGCTCCAATCTGGATAGATGGACTGGTACTCCTTAAAGGGCAGAGACTTGCCCCCTGTGTCTTTGTTTTGAAACTGGTTTGGCCCTGTAATATCTGCTGAGCAGGTGTTGTGGGACAGTGTTGTGGAGTTGGCATCAGTATAACAGACCAGACCTTTAGGGCGATGCACAGCAGCTTTGTGCACTTGATGATCTTTTTCATCTAGGTCACATGGAGCTTTGCAGAAAGGACAGAACTTATTACAACCCTTCACACTTTCATACACCATGTCCTGGAGTTTACTGGGGAGGTTATCAGGGACTTCAATGACATCCTCATTCTCCAAAAATTCCTTAGCTATTGACGAGGTCAACTCAGAGACTGAATCCTGAAGGCTTCCAAGGAAGTGCTCAGGGTGTGTATTTATGTCAAACAAAGGTTGCTGCAAGATTTGAGTTGGCATAGTTATTTTTCCCAGACTCTCGAGGTTGATGCAAACTTTTTCCAGTAGTGTTCTAACATTGATTTGTGCCCCACTATTAAATTCAGACAACTGAGTAATGCACCTCTTCACCCAGTCAAAGATCTGGTGCATTCGCTGTTCCCTTTGGTCTTCTATCATAACAGAACCTGACAAATGAGCTTTGATAAAATTATCAATACTCTTCTGGCTGTAGGTCTCATGGGACTTAAGGTACTCATGGAAATTCTCAAAGCTGTCCTTTACCAGCATTTCTTTAAGAAGACTGTAGTGGAACTTCTTTGGTGAGCTAAAATGATGTGCATTTTTCTTACTAAGCATATCATAAAATATCTGTCTCTCCAAGCTGCTGTAAATGAAATCTTCGGCAGTTGGCTTGAGGCACAGATTGGTGAAAGATCGAGCAGCTTTTTGACACTGGTACCTCTTTCGGAACTGATGTATAAAATTCTGCATGTGTCTGTCCTTGGTCTCAGTAAGGAAAGTCTCTTTAATTTGTCTTTCCCCGAGCAGCTCATCCTGCACCTCTTGAAAAGACCGTGCTGCTTTACTACAGATGTATCCTTTGATATCCACTTCAAATTTGGGACTCATTGCAAATTTCTCACTTTTTAAAACCTCTAGACCCTTGTCGACAATTGCAAGCAACTCACTCATATAGCTATCAGAGTAGCTCTCTTTGTGCTTCAGTTTATCTGAGATTCTCACATCACAGTCTTCAATCAAATTATTGGCAAATCTTTGTGCCACATTTCTATTGTACTTCAGTGAATTCTTCATTCTACTACTCAGAGCAAAATGTGCAGTCCTCACCTCAAACCCATTGAGCTGGTTTGCATTGTGGAGTGTGATGTTTTGATTTCTCAGACCACGTCCACTTAAATTTTCCTTTAATTGATCCACCATCCTTGTAAGGACTTCTTGTGTTTCAAGAAGGGGTTCCCTCAAGTTGGATGGAATATCTTCCCAAACACTAGCAAATTCACGTTCAAGCTCCTTGTCTTCAATTAAGCAGTTGTTGTTCTTGCAGGTCTGCAAGAGTGAACGTAACTTTACCTCCAAGGCTGCCTCAAGGGATGTCAACAAAGCTTGCATCTTAATCGACATATCATGGCGAAGGGTTGCAGACTCAAGTTTCTGGCCAACATCAGATGCCAATTGCTCTTGAATGACATCTACTGTTTTTAGAAGGTTTACTTTGTAATTTTCCACTAGGGAAATATCAATATCCTCCTGCCTAAGGTAGTCCCACAGGCTTGCCTTAATGTGGTCTCTTTCTACGCTGATTTGGCTAGCTGCTTCATTTTTCAAGATTCCAATAATTGCATCTGAATCCAAATtctgttcattttcttttaactCTGTTATGTGATTTTCCAATCCTTCGACCCAATGGTCCAGTTGATCACTGAGGTGCTTTTCTCCCTGTACAAGTTTTGTGCAGAGGCCAATGATGGGATCTGCTTCTCCTGTGTCACCAAACTTCATAGCAAAATTTCCACTTTTCACTAACTCCCACAAATTGCACATAAGCTCCATAAATGCACCCAGACAGGTAGGCAGACCATTTGTTGCCTTTTCATGGAAAATAGTCAAAAGGTTTTTCTTTAGCTTGAGAACTGCATCACTGTATACTTGATCATTTTGGGAAGTCCCAGGTGACAATTTATGGCATAGGTCTCCTGTTTCACTTGTGAGAACTGTTTCTCTTTGAGACATATTTAGAAGCCCTCCTTTAGTCAGTACATCAATTGCATATCTCATGATTTGTCCATCCTTTCCAGCTCCTTCAGACATAACATGAAAGGTAGCCTTCTTCTCCAATGTTTGTGTGAAAATAAGAGCATTGACTGCAATCTGAAGGTTGCGTCTTGTTTCATCCTGACCCGCATCTGTTGTGAAAACCTAAGACTGTCAAGACTCTCATCCGACTGAAGTTTGGCAGTTGCCTGTATAATTCGTAAAGAACACTGTACACCCAGTTCAGGGGAAATACTGAGGCATTTCCATCATAGAGCTCAAGGGGAACTCCATACAGGAGTAATTCAGCACCTACATATGGTAAGCGGAACATGTCATACAAGTCACTGTTCGGACTACGGAAGTATCGTTCGTAGACCAGTCCCATCTCTCTAAGAAAATGCTCAAGTCCAATGCAGGGTTCTTGAATTTGTTCCTGATTTGTTTCCCTAAGAAGGGACAGCTTTTCCAACTGCATAACTTCAAGTTTCACCCTCATCCAAGAGAGGAAATATGCCCTCTTATTTGTTTCAGGTGAACAGACTGCTTCAATAAAAGCTTTCATGGCTGTTGTTAATTTATATTCAAGAATTTGTTTTATGAGATTTTCCTTTTCCTCAATTAAGTTCTGATTTGCATGTTGCTGTTGACGTGCTTCCACTTTCTCCACATGACACAATTGTTTCCATACATCACCCTGTAGGGGCAGTTGGTTTTCCAAATAGGTAGACACTCCATCTTCGATTCCACTGAGGACTTCTTCAACTTCACCGAATGCCGTTCGACAGATCTCATCTTCATCAACATTAATGTCGAGGTCATCGGCCATGCCAGCAGTACCTACAAGGCTTGAGGTGTGCAGGTATGGAATAAAACGATTCAGAACATCTCTTAAACTTTTAGCAATTTCATCCTCATTACCTTCCCATCCATAAAGCACTGTCCCTTCAGGCAGTTCTAAATCCCTCACCAATCTGTGTTTCATTTTCTCATTATCATTCTGCTGTCCATCATTTACTGATGTTGAGCTGTCAATTATAATCATGTGGCTAGTAATATTTCTCCATGAGACAAGCAATTCTCTTTCCTCGGCACCAAAACTTTCACAAAAAACAATAAGGACTGCAGATGTGTAACACAGAAGACTCATCTGTTTTTCATAGTTAGCTGCATCACCACGCAGATTAGCTACAAGCACAGGGCGAGAAAAGGCGCTTTCATGATGGTCTCCTGATGGCAAGTTCCAACATACCTCCACCAGACCATCTGAGAGAACTCGAGGCAGCTCCCCTCCTTTCATACCACAGTTTATGAAGGACTCGTTTAGTTTGTGTGGTCCACCAAGAACATGGTTGAGTACTCGAGATTTTGAGACACTGCAGCTGCCTAGCCTTACTGCAGAGAGAAATGGCATCCTGGAATTTGCCATGTTTTTCATTGTAGGTCCCTCAGAAGGGGACTTCCACTCTCCGAGAACACCTCTAAATGGACTCAAGAGGATGGTTCCCTTCTTTTCTGGGTGAATAGGTGGAAGATACAGAGGTACTGCAAAGTTGGACTGCAACATTCGTTGGGCTATTTCTTGCTGTAGGAAACTATTTGTGGTCATGTAGATGACGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018892 lncRNA upstream 18169 11982450 ~ 11986634 (+) False XLOC_008350
TCONS_00016743 lncRNA upstream 18169 11983021 ~ 11986634 (+) False XLOC_008350
TCONS_00018893 lncRNA upstream 18169 11983146 ~ 11986634 (+) False XLOC_008350
TCONS_00018894 lncRNA upstream 18169 11983170 ~ 11986634 (+) False XLOC_008350
TCONS_00018895 lncRNA upstream 18169 11983833 ~ 11986634 (+) False XLOC_008350
TCONS_00018897 lncRNA downstream 49841 12059240 ~ 12117730 (+) False XLOC_008353
TCONS_00018898 lncRNA downstream 49841 12059240 ~ 12121438 (+) False XLOC_008353
TCONS_00018899 lncRNA downstream 49841 12059240 ~ 12128436 (+) False XLOC_008353
TCONS_00018900 lncRNA downstream 49841 12059240 ~ 12362508 (+) False XLOC_008353
TCONS_00018901 lncRNA downstream 51590 12060989 ~ 12117730 (+) False XLOC_008353
TCONS_00016740 mRNA upstream 95721 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016739 mRNA upstream 128983 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016738 mRNA upstream 134273 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016737 mRNA upstream 184254 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016735 mRNA upstream 247156 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016751 mRNA downstream 20968 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016752 mRNA downstream 368488 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016753 mRNA downstream 419807 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016754 mRNA downstream 426576 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016755 mRNA downstream 426821 12436220 ~ 12454729 (+) True XLOC_008355
TCONS_00016731 other upstream 439294 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2108817 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2693325 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 2965639 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3272937 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1515475 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1948323 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3384843 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4509568 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4820363 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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