RNA id: TU268618


Basic Information

Item Value
RNA id TU268618
length 321
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G236853
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11628707 ~ 11629027 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAATACTCAATAAAGTAGGCTAACTACGCTACCTCAGATGGTTGAATGGTTGGATTCCACAACTGGTAAAATAAAACATATATAAGACAATACAACATTTTCTGTGGGAGCCATACAATTTACTGGTGACTTAATTTAAAAAAAACTGTTCTATTGCGCTTCTGATTTGGCAGTGAAATTCGCCGATTTTGGGTGTGTAAGATGTGAAGGATTCTATGGTCCAGTTAGTATTTTCACCCCATAATGGCGGCCGTGCTACCGGAGCGCCATCTAGTGGCTGTTACCCAAAAAGTATCAAAGTGTCGCCTCTTGGGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268617 lncRNA upstream 191 11628286 ~ 11628516 (+) True G236852
TU268616 lncRNA upstream 5854 11622605 ~ 11622853 (+) True G236851
TU268614 lncRNA upstream 11561 11616827 ~ 11617146 (+) True G236849
TU268613 lncRNA upstream 13790 11614637 ~ 11614917 (+) True G236848
TU268601 lncRNA upstream 20317 11607748 ~ 11608390 (+) True CI01000054_11600741_11608257
TU268622 lncRNA downstream 10877 11639904 ~ 11640550 (+) True G236857
TU268714 lncRNA downstream 67832 11696859 ~ 11697087 (+) True G236924
TU268732 lncRNA downstream 122487 11751514 ~ 11751727 (+) True G236942
TU268767 lncRNA downstream 225946 11854973 ~ 11855763 (+) True G236972
TU268676 lncRNA downstream 269203 11898230 ~ 11907383 (+) True G236886
CI01000054_11600741_11608257.mRNA mRNA upstream 20345 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11564820_11568338.mRNA mRNA upstream 60257 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11536181_11537063.mRNA mRNA upstream 91543 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11409512_11412290.mRNA mRNA upstream 215576 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11289604_11337266.mRNA mRNA upstream 291327 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11633235_11635069.mRNA mRNA downstream 3932 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11637464_11637950.mRNA mRNA downstream 8306 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11648262_11648786.mRNA mRNA downstream 18932 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11659093_11663413.mRNA mRNA downstream 30066 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11666236_11693431.mRNA mRNA downstream 37209 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
TU267998 other upstream 59708 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1236329 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 3299119 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 3323758 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 4018814 7567523 ~ 7609893 (+) True G233024
TU268596 other downstream 3949 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 18952 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 18952 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 184661 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1255875 12884902 ~ 12886503 (+) False G237398

Expression Profile