RNA id: TU268714


Basic Information

Item Value
RNA id TU268714
length 229
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G236924
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11696859 ~ 11697087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTGTGGGTCCTGGTTTAATGTTACTGTCTGGGGCACTGTGTGTGTCCAGATCTTTGTTGGTGGGGTGCAAATGTCTGACTCAGACCTGTACCTCACTGGATGTCTTTTTGCTGATCTTAATCACATTCAGTGTCTCCATGACTACCACATTTTGGGAGCCTAACAAGATAAAAGTTTATTTGGTCCCACTTTATGTTAGGTGTCTTTAACTTATGTACTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268622 lncRNA upstream 56309 11639904 ~ 11640550 (+) True G236857
TU268618 lncRNA upstream 67832 11628707 ~ 11629027 (+) True G236853
TU268617 lncRNA upstream 68343 11628286 ~ 11628516 (+) True G236852
TU268616 lncRNA upstream 74006 11622605 ~ 11622853 (+) True G236851
TU268614 lncRNA upstream 79713 11616827 ~ 11617146 (+) True G236849
TU268732 lncRNA downstream 54427 11751514 ~ 11751727 (+) True G236942
TU268767 lncRNA downstream 157886 11854973 ~ 11855763 (+) True G236972
TU268676 lncRNA downstream 201143 11898230 ~ 11907383 (+) True G236886
TU268685 lncRNA downstream 259985 11957072 ~ 11958097 (+) True G236895
TU268678 lncRNA downstream 261203 11958290 ~ 11968299 (+) True G236888
CI01000054_11666236_11693431.mRNA mRNA upstream 3380 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
CI01000054_11659093_11663413.mRNA mRNA upstream 33252 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11648262_11648786.mRNA mRNA upstream 47364 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11637464_11637950.mRNA mRNA upstream 58668 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11633235_11635069.mRNA mRNA upstream 61756 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11783772_11784302.mRNA mRNA downstream 86685 11783772 ~ 11785006 (+) True CI01000054_11783772_11784302
CI01000054_11785504_11789031.mRNA mRNA downstream 88227 11785314 ~ 11789697 (+) True CI01000054_11785504_11789031
CI01000054_11793688_11807158.mRNA mRNA downstream 96601 11793688 ~ 11807377 (+) True CI01000054_11793688_11807158
CI01000054_11911995_11913792.mRNA mRNA downstream 214048 11911135 ~ 11913857 (+) True CI01000054_11911995_11913792
CI01000054_11984922_12021876.mRNA mRNA downstream 287835 11984922 ~ 12021945 (+) True CI01000054_11984922_12021876
TU268594 other upstream 47834 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 47834 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 62795 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 127860 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1304481 10388136 ~ 10392378 (+) True G235560
TU268664 other downstream 116601 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1187815 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 1187815 12884902 ~ 12886503 (+) True G237398

Expression Profile