RNA id: TU268732


Basic Information

Item Value
RNA id TU268732
length 214
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G236942
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11751514 ~ 11751727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGGGACGGGGGCATGTTTACCATGGTGTAGCATCTCCTCTTCTTTTCAAAACAGTTTGAAGACGTCTGCATCGAGGTTATGAGTTTCTGGAGTTTTGGTGTTGGAATTTGGTCCCATTCTTGCCTGATATAGGTTTCGACATCGCTTCTGGATCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGTTTAGTTGGCATCTGCAGATGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268714 lncRNA upstream 54427 11696859 ~ 11697087 (+) True G236924
TU268622 lncRNA upstream 110964 11639904 ~ 11640550 (+) True G236857
TU268618 lncRNA upstream 122487 11628707 ~ 11629027 (+) True G236853
TU268617 lncRNA upstream 122998 11628286 ~ 11628516 (+) True G236852
TU268616 lncRNA upstream 128661 11622605 ~ 11622853 (+) True G236851
TU268767 lncRNA downstream 103246 11854973 ~ 11855763 (+) True G236972
TU268676 lncRNA downstream 146503 11898230 ~ 11907383 (+) True G236886
TU268685 lncRNA downstream 205345 11957072 ~ 11958097 (+) True G236895
TU268678 lncRNA downstream 206563 11958290 ~ 11968299 (+) True G236888
TU268677 lncRNA downstream 359902 12111629 ~ 12170392 (+) True G236887
CI01000054_11666236_11693431.mRNA mRNA upstream 58035 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
CI01000054_11659093_11663413.mRNA mRNA upstream 87907 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11648262_11648786.mRNA mRNA upstream 102019 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11637464_11637950.mRNA mRNA upstream 113323 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11633235_11635069.mRNA mRNA upstream 116411 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11783772_11784302.mRNA mRNA downstream 32045 11783772 ~ 11785006 (+) True CI01000054_11783772_11784302
CI01000054_11785504_11789031.mRNA mRNA downstream 33587 11785314 ~ 11789697 (+) True CI01000054_11785504_11789031
CI01000054_11793688_11807158.mRNA mRNA downstream 41961 11793688 ~ 11807377 (+) True CI01000054_11793688_11807158
CI01000054_11911995_11913792.mRNA mRNA downstream 159408 11911135 ~ 11913857 (+) True CI01000054_11911995_11913792
CI01000054_11984922_12021876.mRNA mRNA downstream 233195 11984922 ~ 12021945 (+) True CI01000054_11984922_12021876
TU268594 other upstream 102489 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 102489 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 117450 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 182515 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1359136 10388136 ~ 10392378 (+) True G235560
TU268664 other downstream 61961 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1133175 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 1133175 12884902 ~ 12886503 (+) True G237398

Expression Profile