Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU268664 |
| length | 2582 |
| RNA type | TUCP |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G236874 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 11813688 ~ 11816475 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU268732 | lncRNA | upstream | 61961 | 11751514 ~ 11751727 (+) | True | G236942 |
| TU268714 | lncRNA | upstream | 116601 | 11696859 ~ 11697087 (+) | True | G236924 |
| TU268622 | lncRNA | upstream | 173138 | 11639904 ~ 11640550 (+) | True | G236857 |
| TU268618 | lncRNA | upstream | 184661 | 11628707 ~ 11629027 (+) | True | G236853 |
| TU268617 | lncRNA | upstream | 185172 | 11628286 ~ 11628516 (+) | True | G236852 |
| TU268767 | lncRNA | downstream | 38498 | 11854973 ~ 11855763 (+) | True | G236972 |
| TU268676 | lncRNA | downstream | 81755 | 11898230 ~ 11907383 (+) | True | G236886 |
| TU268685 | lncRNA | downstream | 140597 | 11957072 ~ 11958097 (+) | True | G236895 |
| TU268678 | lncRNA | downstream | 141815 | 11958290 ~ 11968299 (+) | True | G236888 |
| TU268677 | lncRNA | downstream | 295154 | 12111629 ~ 12170392 (+) | True | G236887 |
| CI01000054_11793688_11807158.mRNA | mRNA | upstream | 6311 | 11793688 ~ 11807377 (+) | True | CI01000054_11793688_11807158 |
| CI01000054_11785504_11789031.mRNA | mRNA | upstream | 23991 | 11785314 ~ 11789697 (+) | True | CI01000054_11785504_11789031 |
| CI01000054_11783772_11784302.mRNA | mRNA | upstream | 28682 | 11783772 ~ 11785006 (+) | True | CI01000054_11783772_11784302 |
| CI01000054_11666236_11693431.mRNA | mRNA | upstream | 120209 | 11666236 ~ 11693479 (+) | True | CI01000054_11666236_11693431 |
| CI01000054_11659093_11663413.mRNA | mRNA | upstream | 150081 | 11659093 ~ 11663607 (+) | True | CI01000054_11659093_11663413 |
| CI01000054_11911995_11913792.mRNA | mRNA | downstream | 94660 | 11911135 ~ 11913857 (+) | True | CI01000054_11911995_11913792 |
| CI01000054_11984922_12021876.mRNA | mRNA | downstream | 168447 | 11984922 ~ 12021945 (+) | True | CI01000054_11984922_12021876 |
| CI01000054_12030200_12039539.mRNA | mRNA | downstream | 213725 | 12030200 ~ 12039539 (+) | True | CI01000054_12030200_12039539 |
| CI01000054_12039863_12047999.mRNA | mRNA | downstream | 223388 | 12039863 ~ 12047999 (+) | True | CI01000054_12039863_12047999 |
| CI01000054_12049115_12062566.mRNA | mRNA | downstream | 232640 | 12049115 ~ 12062566 (+) | True | CI01000054_12049115_12062566 |
| TU268594 | other | upstream | 164663 | 11647979 ~ 11649025 (+) | False | CI01000054_11648262_11648786 |
| TU268595 | other | upstream | 164663 | 11647979 ~ 11649025 (+) | True | CI01000054_11648262_11648786 |
| TU268596 | other | upstream | 179624 | 11632976 ~ 11634064 (+) | True | CI01000054_11633235_11635069 |
| TU267998 | other | upstream | 244689 | 11564976 ~ 11565121 (+) | True | G236317 |
| TU267167 | other | upstream | 1421310 | 10388136 ~ 10392378 (+) | True | G235560 |
| TU269301 | other | downstream | 1068427 | 12884902 ~ 12886503 (+) | False | G237398 |
| TU269302 | other | downstream | 1068427 | 12884902 ~ 12886503 (+) | True | G237398 |
