Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU268962 |
| length | 1055 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G237101 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 11957060 ~ 11958114 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU268947 | lncRNA | downstream | 45910 | 11909433 ~ 11911150 (-) | True | G237087 |
| TU268984 | lncRNA | downstream | 53061 | 11902050 ~ 11903026 (-) | True | G237123 |
| TU268893 | lncRNA | downstream | 167422 | 11782600 ~ 11789638 (-) | True | G237079 |
| TU268986 | lncRNA | downstream | 342153 | 11614543 ~ 11614907 (-) | True | G237125 |
| TU268573 | lncRNA | downstream | 378362 | 11578372 ~ 11578698 (-) | True | G236815 |
| TU269044 | lncRNA | upstream | 10795 | 11968909 ~ 11969500 (-) | True | G237179 |
| TU269046 | lncRNA | upstream | 13554 | 11971668 ~ 11971928 (-) | True | G237181 |
| TU269049 | lncRNA | upstream | 17453 | 11975567 ~ 11975935 (-) | True | G237184 |
| TU269052 | lncRNA | upstream | 19866 | 11977980 ~ 11978330 (-) | True | CI01000054_11964578_11981248 |
| TU269072 | lncRNA | upstream | 39099 | 11997213 ~ 11997840 (-) | True | G237207 |
| CI01000054_11873443_11903635.mRNA | mRNA | downstream | 52804 | 11872998 ~ 11904256 (-) | False | CI01000054_11873443_11903635 |
| CI01000054_11815575_11845247.mRNA | mRNA | downstream | 110914 | 11815297 ~ 11846146 (-) | True | CI01000054_11815575_11845247 |
| CI01000054_11780397_11781842.mRNA | mRNA | downstream | 175184 | 11780175 ~ 11781876 (-) | False | CI01000054_11780397_11781842 |
| CI01000054_11758803_11774872.mRNA | mRNA | downstream | 182188 | 11758297 ~ 11774872 (-) | True | CI01000054_11758803_11774872 |
| CI01000054_11724484_11731711.mRNA | mRNA | downstream | 225349 | 11723995 ~ 11731711 (-) | True | CI01000054_11724484_11731711 |
| CI01000054_11964578_11981248.mRNA | mRNA | upstream | 6263 | 11964377 ~ 11981319 (-) | False | CI01000054_11964578_11981248 |
| CI01000054_12078098_12079883.mRNA | mRNA | upstream | 119816 | 12077930 ~ 12079896 (-) | True | CI01000054_12078098_12079883 |
| CI01000054_12106998_12109333.mRNA | mRNA | upstream | 148071 | 12106185 ~ 12109835 (-) | True | CI01000054_12106998_12109333 |
| CI01000054_12217279_12251613.mRNA | mRNA | upstream | 258433 | 12216547 ~ 12251613 (-) | True | CI01000054_12217279_12251613 |
| CI01000054_12266910_12288366.mRNA | mRNA | upstream | 308702 | 12266816 ~ 12288366 (-) | True | CI01000054_12266910_12288366 |
| TU268937 | other | downstream | 174576 | 11782349 ~ 11782484 (-) | True | G237082 |
| TU268938 | other | downstream | 175213 | 11778890 ~ 11781847 (-) | False | CI01000054_11780397_11781842 |
| TU268495 | other | downstream | 661276 | 11285194 ~ 11295784 (-) | False | G236748 |
| TU268494 | other | downstream | 665820 | 11285194 ~ 11291240 (-) | False | G236748 |
| TU268162 | other | downstream | 1075844 | 10871104 ~ 10881216 (-) | True | CI01000054_10872970_10881017 |
