RNA id: TU269072


Basic Information

Item Value
RNA id TU269072
length 559
lncRNA type intronic
GC content 0.46
exon number 2
gene id G237207
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11997213 ~ 11997840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTGTTCAAACAGCAGCAGCTGCTGGGAAAGGTTAGCCAGTTCAGATTCCAAGGCCTCAATGTGCAAAAACAAAACTCGAAACCTCTGCTTTTCCCCTCCGTCTCCCTCTCTCTCATACTCCCTCCATGTTTAGCAGCACTGGGAAGGAATGCATTTTGAAAACAGGCTTTGATTTGTACGACTGTTTGCTGTGGGTGAGCTGGAAATGAGAGAGATGGAGAGAGAGGGGCTGTGCTTCCTTCTGATAGGATCCCGTCCACCTCCACCCACCACACTGGCTCAAATGTGGAATGATTCATTTCCTTGCCTTTCAAAGGTGACTGCGCATTCACAAATTCTCAGAAACATTCCCAAATGTGGCTCCATGTGTGAAAAACTATAATTCATGTGGCCCGTGGTTACAAGCACACCAGGATGCACAAACACACATACACACACAACACAGGAAAAGACATAAAGCAAACACAAGCATCAGCTGAACAAACACTTCTGCTGCATTATAAATGCTTCACTTTACACCCCAATGCCTTCTACAGGGAATTAATGAACCACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269052 lncRNA downstream 18883 11977980 ~ 11978330 (-) True CI01000054_11964578_11981248
TU269049 lncRNA downstream 21278 11975567 ~ 11975935 (-) True G237184
TU269046 lncRNA downstream 25285 11971668 ~ 11971928 (-) True G237181
TU269044 lncRNA downstream 27713 11968909 ~ 11969500 (-) True G237179
TU268962 lncRNA downstream 39099 11957060 ~ 11958114 (-) True G237101
TU269077 lncRNA upstream 30924 12028764 ~ 12029016 (-) True G237212
TU269078 lncRNA upstream 31476 12029316 ~ 12029682 (-) True G237213
TU269079 lncRNA upstream 34329 12032169 ~ 12032410 (-) True G237214
TU269088 lncRNA upstream 35317 12033157 ~ 12033647 (-) True G237215
TU268925 lncRNA upstream 41921 12039761 ~ 12098990 (-) False G237081
CI01000054_11964578_11981248.mRNA mRNA downstream 15894 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_11873443_11903635.mRNA mRNA downstream 92957 11872998 ~ 11904256 (-) False CI01000054_11873443_11903635
CI01000054_11815575_11845247.mRNA mRNA downstream 151067 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11780397_11781842.mRNA mRNA downstream 215337 11780175 ~ 11781876 (-) False CI01000054_11780397_11781842
CI01000054_11758803_11774872.mRNA mRNA downstream 222341 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_12078098_12079883.mRNA mRNA upstream 80090 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 108345 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
CI01000054_12217279_12251613.mRNA mRNA upstream 218707 12216547 ~ 12251613 (-) True CI01000054_12217279_12251613
CI01000054_12266910_12288366.mRNA mRNA upstream 268976 12266816 ~ 12288366 (-) True CI01000054_12266910_12288366
CI01000054_12302853_12308339.mRNA mRNA upstream 304647 12302487 ~ 12308339 (-) True CI01000054_12302853_12308339
TU268937 other downstream 214729 11782349 ~ 11782484 (-) True G237082
TU268938 other downstream 215366 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268495 other downstream 701429 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 705973 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 1115997 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017

Expression Profile