RNA id: TU269078


Basic Information

Item Value
RNA id TU269078
length 367
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G237213
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12029316 ~ 12029682 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGTTATACTTTGTAGTTACAACTTTTTAATGACTACAGCTTTTGAAACATTCATTCGGTCAAGTGCAGATTTATCTGTAGTGATATAAACATTTAAGATGTGACAAAAACAAACTGTGATACATACCTTCGGGGTTGGAGCACAAGTAAACTTGAACACAAGCCATCCAATTTCCTTCAGAGCTAAAGTTTTTTATTCACTCCATGTGGCAGCATAAAATTAACATGCAAGCTGAAACATTGTGTTCTTCTAGAAATATGAGAAAAATCCACACTCATTAGCCTGTGGATGGAGGCGAGGAGGGTAACTGCATGTTTTGCCTAGTATCTCATTTCCCAGCAGGAAACATGTCTCTTTTATGTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269077 lncRNA downstream 300 12028764 ~ 12029016 (-) True G237212
TU269072 lncRNA downstream 31476 11997213 ~ 11997840 (-) True G237207
TU269052 lncRNA downstream 50986 11977980 ~ 11978330 (-) True CI01000054_11964578_11981248
TU269049 lncRNA downstream 53381 11975567 ~ 11975935 (-) True G237184
TU269046 lncRNA downstream 57388 11971668 ~ 11971928 (-) True G237181
TU269079 lncRNA upstream 2487 12032169 ~ 12032410 (-) True G237214
TU269088 lncRNA upstream 3475 12033157 ~ 12033647 (-) True G237215
TU268925 lncRNA upstream 10079 12039761 ~ 12098990 (-) False G237081
TU268926 lncRNA upstream 10079 12039761 ~ 12050207 (-) False G237081
TU268929 lncRNA upstream 10079 12039761 ~ 12055511 (-) False G237081
CI01000054_11964578_11981248.mRNA mRNA downstream 47997 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_11873443_11903635.mRNA mRNA downstream 125060 11872998 ~ 11904256 (-) False CI01000054_11873443_11903635
CI01000054_11815575_11845247.mRNA mRNA downstream 183170 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11780397_11781842.mRNA mRNA downstream 247440 11780175 ~ 11781876 (-) False CI01000054_11780397_11781842
CI01000054_11758803_11774872.mRNA mRNA downstream 254444 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_12078098_12079883.mRNA mRNA upstream 48248 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 76503 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
CI01000054_12217279_12251613.mRNA mRNA upstream 186865 12216547 ~ 12251613 (-) True CI01000054_12217279_12251613
CI01000054_12266910_12288366.mRNA mRNA upstream 237134 12266816 ~ 12288366 (-) True CI01000054_12266910_12288366
CI01000054_12302853_12308339.mRNA mRNA upstream 272805 12302487 ~ 12308339 (-) True CI01000054_12302853_12308339
TU268937 other downstream 246832 11782349 ~ 11782484 (-) True G237082
TU268938 other downstream 247469 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268495 other downstream 733532 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 738076 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 1148100 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017

Expression Profile