RNA id: TU268932


Basic Information

Item Value
RNA id TU268932
length 649
lncRNA type antisense_over
GC content 0.57
exon number 3
gene id G237081
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12039761 ~ 12098990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTAGGGTCTTACCCCTTTATGTGGTCGGCACTGGGGCTCCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCTTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGTTACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269088 lncRNA downstream 6114 12033157 ~ 12033647 (-) True G237215
TU269079 lncRNA downstream 7351 12032169 ~ 12032410 (-) True G237214
TU269078 lncRNA downstream 10079 12029316 ~ 12029682 (-) True G237213
TU269077 lncRNA downstream 10745 12028764 ~ 12029016 (-) True G237212
TU269072 lncRNA downstream 41921 11997213 ~ 11997840 (-) True G237207
TU269099 lncRNA upstream 18112 12066222 ~ 12071483 (-) False G237221
TU269102 lncRNA upstream 20737 12068847 ~ 12070754 (-) True G237221
TU268958 lncRNA upstream 63309 12111419 ~ 12144763 (-) True G237097
TU269121 lncRNA upstream 118148 12166258 ~ 12167308 (-) True G237237
TU269115 lncRNA upstream 165324 12213434 ~ 12215862 (-) True G237231
CI01000054_11964578_11981248.mRNA mRNA downstream 58442 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_11873443_11903635.mRNA mRNA downstream 135505 11872998 ~ 11904256 (-) False CI01000054_11873443_11903635
CI01000054_11815575_11845247.mRNA mRNA downstream 193615 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11780397_11781842.mRNA mRNA downstream 257885 11780175 ~ 11781876 (-) False CI01000054_11780397_11781842
CI01000054_11758803_11774872.mRNA mRNA downstream 264889 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_12078098_12079883.mRNA mRNA upstream 29820 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 58075 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
CI01000054_12217279_12251613.mRNA mRNA upstream 168437 12216547 ~ 12251613 (-) True CI01000054_12217279_12251613
CI01000054_12266910_12288366.mRNA mRNA upstream 218706 12266816 ~ 12288366 (-) True CI01000054_12266910_12288366
CI01000054_12302853_12308339.mRNA mRNA upstream 254377 12302487 ~ 12308339 (-) True CI01000054_12302853_12308339
TU268937 other downstream 257277 11782349 ~ 11782484 (-) True G237082
TU268938 other downstream 257914 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268495 other downstream 743977 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 748521 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 1158545 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017

Expression Profile