Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU269121 |
| length | 918 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 3 |
| gene id | G237237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 12166258 ~ 12167308 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU268958 | lncRNA | downstream | 21495 | 12111419 ~ 12144763 (-) | True | G237097 |
| TU268925 | lncRNA | downstream | 67268 | 12039761 ~ 12098990 (-) | False | G237081 |
| TU269099 | lncRNA | downstream | 94775 | 12066222 ~ 12071483 (-) | False | G237221 |
| TU269102 | lncRNA | downstream | 95504 | 12068847 ~ 12070754 (-) | True | G237221 |
| TU268929 | lncRNA | downstream | 110747 | 12039761 ~ 12055511 (-) | False | G237081 |
| TU269115 | lncRNA | upstream | 46126 | 12213434 ~ 12215862 (-) | True | G237231 |
| TU269189 | lncRNA | upstream | 151262 | 12318570 ~ 12320593 (-) | True | G237302 |
| TU269196 | lncRNA | upstream | 190992 | 12358300 ~ 12360324 (-) | True | G237303 |
| TU269225 | lncRNA | upstream | 204386 | 12371694 ~ 12371915 (-) | True | G237332 |
| TU269226 | lncRNA | upstream | 205826 | 12373134 ~ 12373576 (-) | True | G237333 |
| CI01000054_12106998_12109333.mRNA | mRNA | downstream | 56423 | 12106185 ~ 12109835 (-) | True | CI01000054_12106998_12109333 |
| CI01000054_12078098_12079883.mRNA | mRNA | downstream | 86362 | 12077930 ~ 12079896 (-) | True | CI01000054_12078098_12079883 |
| CI01000054_11964578_11981248.mRNA | mRNA | downstream | 184939 | 11964377 ~ 11981319 (-) | False | CI01000054_11964578_11981248 |
| CI01000054_11873443_11903635.mRNA | mRNA | downstream | 262002 | 11872998 ~ 11904256 (-) | False | CI01000054_11873443_11903635 |
| CI01000054_11815575_11845247.mRNA | mRNA | downstream | 320112 | 11815297 ~ 11846146 (-) | True | CI01000054_11815575_11845247 |
| CI01000054_12217279_12251613.mRNA | mRNA | upstream | 49239 | 12216547 ~ 12251613 (-) | True | CI01000054_12217279_12251613 |
| CI01000054_12266910_12288366.mRNA | mRNA | upstream | 99508 | 12266816 ~ 12288366 (-) | True | CI01000054_12266910_12288366 |
| CI01000054_12302853_12308339.mRNA | mRNA | upstream | 135179 | 12302487 ~ 12308339 (-) | True | CI01000054_12302853_12308339 |
| CI01000054_12309670_12316748.mRNA | mRNA | upstream | 142362 | 12309670 ~ 12316748 (-) | True | CI01000054_12309670_12316748 |
| CI01000054_12821724_12830490.mRNA | mRNA | upstream | 653568 | 12820876 ~ 12830490 (-) | True | CI01000054_12821724_12830490 |
| TU268937 | other | downstream | 383774 | 11782349 ~ 11782484 (-) | True | G237082 |
| TU268938 | other | downstream | 384411 | 11778890 ~ 11781847 (-) | False | CI01000054_11780397_11781842 |
| TU268495 | other | downstream | 870474 | 11285194 ~ 11295784 (-) | False | G236748 |
| TU268494 | other | downstream | 875018 | 11285194 ~ 11291240 (-) | False | G236748 |
| TU268162 | other | downstream | 1285042 | 10871104 ~ 10881216 (-) | True | CI01000054_10872970_10881017 |
