RNA id: TU268813


Basic Information

Item Value
RNA id TU268813
length 373
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G237016
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12225676 ~ 12226328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGACTCCGTTATAGGGACATGGGAAATCCGGATTGACTCCTGACGTTGGTCTGGTGTCATGGTAACTAAAGCCACAATATCAGGTGGAGGTCTAATGACTGTGGGCAGCACATAAACACAGTCGGCAGGGAAATCTCCTCTCTGTTTGGTTCTGTCGTTGATCCCGTGTGCCCAGCCTGATGTCATGACCTGCTCGCCCGTGTCCTGGTCCAGCAGAATGAGGTCACCTTTTAGGAAGCTCAGGAACGTTGAATCATCGCCAGCTGGACTGGGGTTGTCCTGTAAGGCCACAACAAACTTAGATCTCTTCCTGAGTCCCTCTAAGAAGGTGACCACCAGGTCCCGTATGTCCTCTGCATTATTGGAGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268811 lncRNA upstream 360 12224596 ~ 12225316 (+) True G237015
TU268677 lncRNA upstream 55284 12111629 ~ 12170392 (+) True G236887
TU268678 lncRNA upstream 257377 11958290 ~ 11968299 (+) True G236888
TU268685 lncRNA upstream 267579 11957072 ~ 11958097 (+) True G236895
TU268676 lncRNA upstream 318293 11898230 ~ 11907383 (+) True G236886
TU268669 lncRNA downstream 83127 12309455 ~ 12310013 (+) True G236879
TU268846 lncRNA downstream 91984 12320312 ~ 12320602 (+) False G237041
TU268848 lncRNA downstream 91984 12320312 ~ 12320602 (+) True G237041
TU268839 lncRNA downstream 92242 12318570 ~ 12320602 (+) False CI01000054_12318711_12319755
TU268840 lncRNA downstream 92242 12320295 ~ 12320602 (+) False G237041
CI01000054_12191048_12211237.mRNA mRNA upstream 14439 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 58677 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12097635_12100640.mRNA mRNA upstream 125036 12097436 ~ 12100640 (+) True CI01000054_12097635_12100640
CI01000054_12081184_12095030.mRNA mRNA upstream 130176 12080748 ~ 12095500 (+) True CI01000054_12081184_12095030
CI01000054_12064156_12077740.mRNA mRNA upstream 147828 12063779 ~ 12077848 (+) True CI01000054_12064156_12077740
CI01000054_12296634_12299462.mRNA mRNA downstream 70306 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12318711_12319755.mRNA mRNA downstream 92383 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12321079_12339203.mRNA mRNA downstream 94751 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12524575_12697096.mRNA mRNA downstream 298247 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 585306 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
TU268664 other upstream 409201 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 576651 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 576651 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 591612 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 656677 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 658574 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 658574 12884902 ~ 12886503 (+) True G237398

Expression Profile