RNA id: TU268669


Basic Information

Item Value
RNA id TU268669
length 329
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G236879
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12309455 ~ 12310013 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGGATGTTCTCCCGTGCTATACGTCACATTGCATAGCAATATTGCTTTTGAGAATTAAGTTCTTATTATCGTAGCCATGTTCAAAGAAGCAAAACAGTCTCTTTGTTGTCCATGAGTAGTTTGTGAAAAAAAGAATCTACATATTCATAGCAGTATGACAAAGCAATGTTTGAAAACAGATGACCAATGTGAAAAACTGGTGAAGTGAGTTTACAGTCCTAATTCAAGATCTTCAAGCTCTTTCAACAGCTGGGACTCCTTCTGCATCTTCTCAAGCTGGATTTTTTTGCATTACTTTGCCGGCCGCCTGTTGCTCCTTCAGTTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268813 lncRNA upstream 83127 12225676 ~ 12226328 (+) True G237016
TU268811 lncRNA upstream 84139 12224596 ~ 12225316 (+) True G237015
TU268677 lncRNA upstream 139063 12111629 ~ 12170392 (+) True G236887
TU268678 lncRNA upstream 341156 11958290 ~ 11968299 (+) True G236888
TU268685 lncRNA upstream 351358 11957072 ~ 11958097 (+) True G236895
TU268846 lncRNA downstream 8299 12320312 ~ 12320602 (+) False G237041
TU268848 lncRNA downstream 8299 12320312 ~ 12320602 (+) True G237041
TU268839 lncRNA downstream 8557 12318570 ~ 12320602 (+) False CI01000054_12318711_12319755
TU268840 lncRNA downstream 8557 12320295 ~ 12320602 (+) False G237041
TU268841 lncRNA downstream 8557 12320312 ~ 12320602 (+) False G237041
CI01000054_12296634_12299462.mRNA mRNA upstream 9907 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 98218 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 142456 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12097635_12100640.mRNA mRNA upstream 208815 12097436 ~ 12100640 (+) True CI01000054_12097635_12100640
CI01000054_12081184_12095030.mRNA mRNA upstream 213955 12080748 ~ 12095500 (+) True CI01000054_12081184_12095030
CI01000054_12318711_12319755.mRNA mRNA downstream 8698 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12321079_12339203.mRNA mRNA downstream 11066 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12524575_12697096.mRNA mRNA downstream 214562 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 501621 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 535165 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
TU268664 other upstream 492980 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 660430 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 660430 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 675391 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 740456 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 574889 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 574889 12884902 ~ 12886503 (+) True G237398

Expression Profile