Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU268850 |
| length | 2034 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G237043 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 12358290 ~ 12360323 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU268843 | lncRNA | upstream | 37530 | 12320295 ~ 12320760 (+) | False | G237041 |
| TU268846 | lncRNA | upstream | 37688 | 12320312 ~ 12320602 (+) | False | G237041 |
| TU268848 | lncRNA | upstream | 37688 | 12320312 ~ 12320602 (+) | True | G237041 |
| TU268839 | lncRNA | upstream | 37688 | 12318570 ~ 12320602 (+) | False | CI01000054_12318711_12319755 |
| TU268840 | lncRNA | upstream | 37688 | 12320295 ~ 12320602 (+) | False | G237041 |
| TU268854 | lncRNA | downstream | 5478 | 12365801 ~ 12366046 (+) | True | G237045 |
| TU268856 | lncRNA | downstream | 7354 | 12367677 ~ 12367916 (+) | True | G237047 |
| TU268861 | lncRNA | downstream | 20108 | 12380431 ~ 12380747 (+) | True | G237052 |
| TU268873 | lncRNA | downstream | 33256 | 12393579 ~ 12393793 (+) | True | G237063 |
| TU268876 | lncRNA | downstream | 35332 | 12395655 ~ 12395983 (+) | True | G237066 |
| CI01000054_12321079_12339203.mRNA | mRNA | upstream | 19087 | 12321079 ~ 12339203 (+) | True | CI01000054_12321079_12339203 |
| CI01000054_12318711_12319755.mRNA | mRNA | upstream | 38320 | 12318711 ~ 12319970 (+) | False | CI01000054_12318711_12319755 |
| CI01000054_12296634_12299462.mRNA | mRNA | upstream | 58742 | 12296634 ~ 12299548 (+) | True | CI01000054_12296634_12299462 |
| CI01000054_12191048_12211237.mRNA | mRNA | upstream | 147053 | 12189522 ~ 12211237 (+) | True | CI01000054_12191048_12211237 |
| CI01000054_12142398_12166344.mRNA | mRNA | upstream | 191291 | 12142398 ~ 12166999 (+) | True | CI01000054_12142398_12166344 |
| CI01000054_12524575_12697096.mRNA | mRNA | downstream | 164252 | 12524575 ~ 12697096 (+) | True | CI01000054_12524575_12697096 |
| CI01000054_12811634_12819065.mRNA | mRNA | downstream | 451311 | 12811634 ~ 12819280 (+) | False | CI01000054_12811634_12819065 |
| CI01000054_12846104_12850954.mRNA | mRNA | downstream | 484855 | 12845178 ~ 12851346 (+) | True | CI01000054_12846104_12850954 |
| CI01000054_12887165_12901376.mRNA | mRNA | downstream | 526750 | 12887073 ~ 12902006 (+) | False | CI01000054_12887165_12901376 |
| CI01000054_12982344_12998857.mRNA | mRNA | downstream | 620606 | 12980929 ~ 12999175 (+) | False | CI01000054_12982344_12998857 |
| TU268664 | other | upstream | 541815 | 11813688 ~ 11816475 (+) | True | G236874 |
| TU268594 | other | upstream | 709265 | 11647979 ~ 11649025 (+) | False | CI01000054_11648262_11648786 |
| TU268595 | other | upstream | 709265 | 11647979 ~ 11649025 (+) | True | CI01000054_11648262_11648786 |
| TU268596 | other | upstream | 724226 | 11632976 ~ 11634064 (+) | True | CI01000054_11633235_11635069 |
| TU267998 | other | upstream | 789291 | 11564976 ~ 11565121 (+) | True | G236317 |
| TU269301 | other | downstream | 524579 | 12884902 ~ 12886503 (+) | False | G237398 |
| TU269302 | other | downstream | 524579 | 12884902 ~ 12886503 (+) | True | G237398 |
