RNA id: TCONS_00018900


Basic Information

Item Value
RNA id TCONS_00018900
length 1106
lncRNA type read_through
GC content 0.46
exon number 7
gene id XLOC_008353
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12059240 ~ 12362508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTATACTGGTTATGTGGCAAGGAGTTGCTAATTTAGCCACAAAGAAGAAAAACACCTGTAATCGAAagGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGATCATCACAGTTCCAGTGCCTTACCTCCAAGCCAGATGGCCACCGCAATGAGACCCAACACCAGCAGGACACCTACCAATCCACCCCAACATTTAGCAGTCCGTCCACAAGACTGCTGCCTTCTAGGAGCTGATGAAACAAGAACAAGATGACTACAACGTGACCGCACTCTCCTGCACAGCAGTTGTAAGAAGGAAACTCTTCAGTTCATCATCGTCACAGCAGTGGCAGCTGTTTGACAGCACTGAACAGGAAGAGCTGAACTCGCACTACACAAAGACAGAATGACAAGGCAAAAAAGGTCAGCTGTGATTCAACAACTTTCTGCACCACAGGTAGCACTGTTCAGCCTTTTACCGTCACTGAGCATCTTTTAATCACACTCCCCAGGGACACACTTCTGCTGGAGTAAAAGTTTTAAACCGGGAGCAATAacttttgtgaatttattttaccTTCCTTATATCCTTGTGCTTGTTTGTCCATGAATACTTTCTATTAACATATCTTTATGCTTGACTAAGACACACGCAACCTTGATGGATTGAATTATTTCAACCAATATGCAA

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04810 Regulation of actin cytoskeleton
ko04972 Pancreatic secretion
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018896 lncRNA upstream 49841 12004803 ~ 12009399 (+) True XLOC_008351
TCONS_00016747 lncRNA upstream 72606 11984034 ~ 11986634 (+) False XLOC_008350
TCONS_00018903 lncRNA downstream 145291 12507799 ~ 12525596 (+) False XLOC_008356
TCONS_00018904 lncRNA downstream 145338 12507846 ~ 12521524 (+) False XLOC_008356
TCONS_00018905 lncRNA downstream 145338 12507846 ~ 12522794 (+) True XLOC_008356
TCONS_00018906 lncRNA downstream 257599 12620107 ~ 12621628 (+) True XLOC_008357
TCONS_00018907 lncRNA downstream 638685 13001193 ~ 13091234 (+) False XLOC_008358
TCONS_00016751 mRNA upstream 4494 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016740 mRNA upstream 150158 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016739 mRNA upstream 183420 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016738 mRNA upstream 188710 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016737 mRNA upstream 238691 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016752 mRNA downstream 15379 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016753 mRNA downstream 66698 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016754 mRNA downstream 73467 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016755 mRNA downstream 73712 12436220 ~ 12454729 (+) True XLOC_008355
TCONS_00016759 mRNA downstream 1622371 13984879 ~ 13986761 (+) True XLOC_008362
TCONS_00016731 other upstream 493731 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2163254 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2747762 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 3020076 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3327374 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1162366 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1595214 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3031734 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4156459 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4467254 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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