RNA id: TU268881


Basic Information

Item Value
RNA id TU268881
length 307
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G237068
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12399728 ~ 12400104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACACAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCGTCTTTTAGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTAGAGTGTGGCACCAGGTGTCTTCAATATTGAACCTTTTCACAATATTCTAATTTTCTGAGATACTGAATTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268877 lncRNA upstream 1044 12398491 ~ 12398754 (+) True G237067
TU268876 lncRNA upstream 3815 12395655 ~ 12395983 (+) True G237066
TU268873 lncRNA upstream 6005 12393579 ~ 12393793 (+) True G237063
TU268861 lncRNA upstream 19051 12380431 ~ 12380747 (+) True G237052
TU268856 lncRNA upstream 31882 12367677 ~ 12367916 (+) True G237047
TU268882 lncRNA downstream 440 12400544 ~ 12400783 (+) True G237069
TU268885 lncRNA downstream 20274 12420378 ~ 12420785 (+) True G237072
TU268888 lncRNA downstream 26934 12427038 ~ 12427413 (+) True G237075
TU269262 lncRNA downstream 39265 12439369 ~ 12439587 (+) True G237369
TU269274 lncRNA downstream 211918 12612022 ~ 12613528 (+) True G237376
CI01000054_12321079_12339203.mRNA mRNA upstream 60595 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 79828 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 100250 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 188561 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 232799 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12524575_12697096.mRNA mRNA downstream 124471 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 411530 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 445074 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 486969 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 580825 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 583323 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 750773 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 750773 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 765734 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 830799 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 484798 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 484798 12884902 ~ 12886503 (+) True G237398

Expression Profile