RNA id: TU268882


Basic Information

Item Value
RNA id TU268882
length 240
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G237069
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12400544 ~ 12400783 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAACGTATACAGCTACATTTGAGGAAGAGTGAAAACTCTTTACATGTGCTCGCGCTCATAACCTCTGAACATCTGAACACAATGATCAAATGCACATTGACGGATCTTCTTCCGTCTGTTCTCCAAAATGTAATCAAATGTATATTTCTGCAGGCGCGTGTAAACTGGTTAACGTTAATTTTCAAGACAAACAGGTTGCCCGGCGCCGCCACTGCGCTACCCATAAATTATCGCGGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268878 lncRNA upstream 440 12399728 ~ 12400104 (+) False G237068
TU268881 lncRNA upstream 440 12399798 ~ 12400104 (+) True G237068
TU268877 lncRNA upstream 1790 12398491 ~ 12398754 (+) True G237067
TU268876 lncRNA upstream 4561 12395655 ~ 12395983 (+) True G237066
TU268873 lncRNA upstream 6751 12393579 ~ 12393793 (+) True G237063
TU268885 lncRNA downstream 19595 12420378 ~ 12420785 (+) True G237072
TU268888 lncRNA downstream 26255 12427038 ~ 12427413 (+) True G237075
TU269262 lncRNA downstream 38586 12439369 ~ 12439587 (+) True G237369
TU269274 lncRNA downstream 211239 12612022 ~ 12613528 (+) True G237376
TU269272 lncRNA downstream 217739 12618522 ~ 12629743 (+) True G237374
CI01000054_12321079_12339203.mRNA mRNA upstream 61341 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 80574 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 100996 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 189307 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 233545 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12524575_12697096.mRNA mRNA downstream 123792 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 410851 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 444395 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 486290 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 580146 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 584069 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 751519 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 751519 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 766480 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 831545 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 484119 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 484119 12884902 ~ 12886503 (+) True G237398

Expression Profile