RNA id: TU268888


Basic Information

Item Value
RNA id TU268888
length 376
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G237075
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12427038 ~ 12427413 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCGGAACACAAATTAAGATATTTTTCATAAAATCCGATGGCTCAGTGAGACCTCCATTGACAGCAAGACAATTAACACTTTCAATTCCCAGAAAGCTACTAAAGACGTATTTAAAACAGTTCATGTGGCTACAGTGGTTCAACCTTAATGTTATGAAGCGACAAGAATACTTTTTGTGCGCCAAAAAAAACAAAATAACGACTTTATGACAATATCTAGTGATGGGCGAATTTCAAAACACTGCTTCGTAAGTTGAATACGGAAGGCGGTCTGGCGGAAGCTAGATATTTTACTTTATAACTTGTTAAATATGGATATTTTTCTTACACAAACGCATCGCTTCACTTCAGAAGGCCTTTATTAACCCCCCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268885 lncRNA upstream 6253 12420378 ~ 12420785 (+) True G237072
TU268882 lncRNA upstream 26255 12400544 ~ 12400783 (+) True G237069
TU268878 lncRNA upstream 26934 12399728 ~ 12400104 (+) False G237068
TU268881 lncRNA upstream 26934 12399798 ~ 12400104 (+) True G237068
TU268877 lncRNA upstream 28284 12398491 ~ 12398754 (+) True G237067
TU269262 lncRNA downstream 11956 12439369 ~ 12439587 (+) True G237369
TU269274 lncRNA downstream 184609 12612022 ~ 12613528 (+) True G237376
TU269272 lncRNA downstream 191109 12618522 ~ 12629743 (+) True G237374
TU269298 lncRNA downstream 303297 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA downstream 390856 12819695 ~ 12821913 (+) True G237396
CI01000054_12321079_12339203.mRNA mRNA upstream 87835 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 107068 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 127490 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 215801 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 260039 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12524575_12697096.mRNA mRNA downstream 97162 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 384221 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 417765 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 459660 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 553516 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 610563 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 778013 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 778013 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 792974 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 858039 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 457489 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 457489 12884902 ~ 12886503 (+) True G237398

Expression Profile