RNA id: TU269262


Basic Information

Item Value
RNA id TU269262
length 219
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G237369
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12439369 ~ 12439587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTTTCAATAAATTCGACTAAAAACATCGTTAAAGCATTAAAGCCACGATATTTAATATTAATACATGGGAATTCATATACATTCACACTTTACGTTACATGATTTACGTTTTTTTTGCTGTTAATACGTAAGTATTTTTACGTTTTAGTGCTATAAATACGTCAATGTTGTACGTTTTTGTGTGTATGAAAACGTAAGTAAATGTATGTGTGGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268888 lncRNA upstream 11956 12427038 ~ 12427413 (+) True G237075
TU268885 lncRNA upstream 18584 12420378 ~ 12420785 (+) True G237072
TU268882 lncRNA upstream 38586 12400544 ~ 12400783 (+) True G237069
TU268878 lncRNA upstream 39265 12399728 ~ 12400104 (+) False G237068
TU268881 lncRNA upstream 39265 12399798 ~ 12400104 (+) True G237068
TU269274 lncRNA downstream 172435 12612022 ~ 12613528 (+) True G237376
TU269272 lncRNA downstream 178935 12618522 ~ 12629743 (+) True G237374
TU269298 lncRNA downstream 291123 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA downstream 378682 12819695 ~ 12821913 (+) True G237396
TU269349 lncRNA downstream 431129 12870716 ~ 12878293 (+) True G237436
CI01000054_12321079_12339203.mRNA mRNA upstream 100166 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 119399 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 139821 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 228132 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 272370 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12524575_12697096.mRNA mRNA downstream 84988 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 372047 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 405591 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 447486 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 541342 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 622894 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 790344 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 790344 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 805305 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 870370 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 445315 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 445315 12884902 ~ 12886503 (+) True G237398

Expression Profile