RNA id: TU269274



Basic Information


Item Value
RNA id TU269274
length 1464
lncRNA type intronic
GC content 0.41
exon number 2
gene id G237376
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12612022 ~ 12613528 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCTAAGAGTGAAAACAGTGAAGTAAACAGAAAAGAGTGTAAACAGGACAAACTGTTGTTAATGCCTTCAGTCTGAACTCAAAAATGATTGTACTTTTGACAGAAAATGACTTTGCATACATTGAAAGAATAGGAACACCAAAAAATGTCCATATGACTTTAGCAGCAACTCCATAAAAAGACAGCAGATAGTGACGAGGCACTATCCATGCAACTCATTTGTGCATGTGCATATTCCAACTTGCTGTAAGACACATTGCGTCAAATTCAGGTTTGTATGCAATCTCAAATGTGATATGAGACCTGAGTAAATGATGACAGAAGTTAATTTTTGGTTGAACTCTTCCTTTAAGAGTTTTAACAGTTTTTAATCAGTTTTGTTTTCTATATCAGAGGCCACATTCACACAGCAGCAGAATACGGTTGTCAGTCCTGTATCTGAGTCCTTAATACGGTTACGTTCACACACAGTACGGTTATTTACAGGTGTGACAACTGAATTCTATAACCGAACTCACTCCCGCAAATTTTCAGGACTCACAACCGCATTCTCGGAATTTTTGCGCTGTGTGAACGGAACAGGACTGGACAACTAGTTGTCTGTCACGTCATACAGTGCGAGAGAGCCGCTCTTCTAAGGTGTTTTGTGTGTGGTTTCGCTTTCAGTAACTTACAGCGACAGAGATATGAGCTGTGCGTCATCTTAAGATGTTAGATCCAGTCACTGTTCTCCACCGGAGCTCCCCCGTCAGTTTTGTGTTTCTTTTCCAAATTAAAATACCGTGTCATGCACGAGTGCAACGGTTAAACACTCCGGCTATGGCGTGTTTACATGCTGCTGTTGGTTAATGAAGTTTGAATGGATACACTTTTCAGTTTTATGGACGTCGCCATCTTTAATATTACATTGGTCACTGTCGTTATGGTTACTAGTAAGAGAATACGGGCTTGACTCTCGTTGCACGTTCATACAGACAGTGTTCCAGACGTTACTGTAAGTTGCTGTGTGAATGGGACATTTCGAGACTCACACCTGTAAATAAATGCAGTTGCAATCCCAAAAACTGACAGTGTGAACGTGGCCAGAGTGTGACATTTTGTGAGTTGCATCTGCAGGTAAAAATAGGACCTGTTCTCCAAACGAAATGAAAAGGCTGTTGACACTGTGTTTAGTTGTTTGGCAGCCGAACTTGAAGATTCAGAGAGCATCTGCAGGGAGTGATTATTGTTAACCAGTGATGGGAGTGTGTTCGCCTGTCAATTACGAATGTGTGCGTGCATGTGTGCGTGTGTGTGTGTGAGTTTGTATAATCAATGTAAATAAACAGATTTGTTGTGTTGAAACCCTTCCAGGGAGTCTTTGTGAAAAATGATTGGAGTCAATCATTGCACATTCTATGTTTAACAGCTGAGATTTAAATGTGCAGTCTTTAAAATATGTAATGTTTAAAGGCATACTACTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU269262 lncRNA upstream 172435 12439369 ~ 12439587 (+) True G237369
TU268888 lncRNA upstream 184609 12427038 ~ 12427413 (+) True G237075
TU268885 lncRNA upstream 191237 12420378 ~ 12420785 (+) True G237072
TU268882 lncRNA upstream 211239 12400544 ~ 12400783 (+) True G237069
TU268878 lncRNA upstream 211918 12399728 ~ 12400104 (+) False G237068
TU269272 lncRNA downstream 4994 12618522 ~ 12629743 (+) True G237374
TU269298 lncRNA downstream 117182 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA downstream 204741 12819695 ~ 12821913 (+) True G237396
TU269349 lncRNA downstream 257188 12870716 ~ 12878293 (+) True G237436
TU269552 lncRNA downstream 341004 12954532 ~ 12954797 (+) True G237621
CI01000054_12321079_12339203.mRNA mRNA upstream 272819 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 292052 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 312474 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 400785 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 445023 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12811634_12819065.mRNA mRNA downstream 198106 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 231650 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 273545 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 367401 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 795547 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 962997 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 962997 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 977958 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 1043023 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 271374 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 271374 12884902 ~ 12886503 (+) True G237398

Expression Profile