RNA id: TU269298



Basic Information


Item Value
RNA id TU269298
length 1538
lncRNA type read_through
GC content 0.37
exon number 2
gene id G237396
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12730710 ~ 12821913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTTTTTTTTTTTTTTAACAATAAATAAAATATATTTATTTTCTCAAACAGAGTTTCAGTATTTGGCACAAAAGACAGTGTTTGGCAATGATACAGTGTTACAGGCACTACAGTAAAATAAAGCACTTTGGAAATTATTCTGTAAACGAAACCAAAATGTCCACAGAAGATTAAGAAACATTCACTCAGAATTCTTTTGTTTTACTTTTGTGAAGTGGAGGGACTGTAAAGAGATAAGATGAACAGAATCTACTGGCGCTTTGCAACCCCTTTTTGAGAAATAAAATATGAACTTTAACCATAATTTACAGTATAAATGTGGATATTTAATCTAAACATTCCAAATCAAATCCCGTGATTAAATAGCAGTAAAGTTACATGAACCAGAGTCCAGAAATACAGAAAAACCACAACCAACACCTGGTCAATGTCTTAACAAATATACAATATAAATCGACTACTAATCTAAATATGAATACGATGACATCTAAATACTTGTTTTATTTGTCTGACACATCTACATGACTAGAGATAACATAGTAACACGTTTAAAAGTGTGAAGTTCTACAAACTTGTTAAAAAGTGGCATTGAAGGGAGTGCGATTCACCATCAGTCCACTAGAGAGGGACAACCAGCACAAATTATTTAAGGAACAGTTCACCAAAAAAAATGACAATCTTGTCATAATTTACTCACCCTCATCATTTTAAGTTTATATGATGTTTTTCTTATTTTTCATTTAAAAAAAAAAAAGTGGGTTTCAAATAACATGGGAGGTGAGATAATAATGACAAAACTGTCATTTTGAACTTTTTTTAAATATATATTTTAAATATGTTTATATTTCAGTGATTTTGAGATGTGAGGTTCTCATTAAGAAATCACAAACCTCATTTTCTAACAACTGTGTCACACAGTATTGGAATCAGAGAAATGCACTGATGTCCACTGCATGCATTTAGTCCAGATTGTTTTAACAGTAACTGCACTAACAGTGAAAGGCACAGCGAGAGAAATCAAGCCCTTGATACACATCTAGTCTGATGCATTAAGGGTTCTGAATGAAGGATTTGTTGTAAAGTGCTCTCAAAACGTGGAGACTGGTAACCAGCTGAAAGTACCAGCCTTGATAATCTAGGTGGCTTTAGTCCATTCGTTCTGAGAAAAACTAAGTGAGGATGTGGCAACCCCTGGTTTAATGCAGCGCAGGGTCTCTGATCCTCTACAGCCACTGAATTAAACTGAAATGAATACGAATAATGAAAAAGATCAGAGAGCCTTCACTGTGTCTTGAAGCAGAGGCCACACAGGGAGGATTATTACTGTAAAGTGGCAGAAACGTGGAATTAGCAGGCACACTTGCTCTGGTCTGTGTCCCGCGGCTCTGCCAGGTCGTTGGTGCTGTGACCGTTGGTTCGAACGGTTCCGTCAGGTATCCAGGATTTGTCCACGCATCGCTCCATGCGCTTCATGATCAAATCCAGCAGAACCTCCACGGCATGGCTCACGTTCTCACCGTTGGCAGCGCTTGTCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU269272 lncRNA upstream 100967 12618522 ~ 12629743 (+) True G237374
TU269274 lncRNA upstream 117182 12612022 ~ 12613528 (+) True G237376
TU269262 lncRNA upstream 291123 12439369 ~ 12439587 (+) True G237369
TU268888 lncRNA upstream 303297 12427038 ~ 12427413 (+) True G237075
TU268885 lncRNA upstream 309925 12420378 ~ 12420785 (+) True G237072
TU269349 lncRNA downstream 48803 12870716 ~ 12878293 (+) True G237436
TU269552 lncRNA downstream 132619 12954532 ~ 12954797 (+) True G237621
TU269558 lncRNA downstream 144715 12966628 ~ 12966937 (+) True G237627
TU269562 lncRNA downstream 158854 12980767 ~ 12980980 (+) True CI01000054_12982344_12998857
CI01000054_12524575_12697096.mRNA mRNA upstream 33614 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12321079_12339203.mRNA mRNA upstream 391507 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 410740 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 431162 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 519473 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12846104_12850954.mRNA mRNA downstream 23265 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 65160 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 159016 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 914235 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 1081685 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 1081685 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 1096646 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 1161711 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 62989 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 62989 12884902 ~ 12886503 (+) True G237398

Expression Profile