RNA id: TCONS_00018903


Basic Information

Item Value
RNA id TCONS_00018903
length 3081
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id XLOC_008356
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12507799 ~ 12525596 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaaaaatagttaaaatgtgCTAAATAGATAGGTCTGATCGAAAAGCATTTGCAGATGAATAGCGCCGTCACATGATGCAGATGTGACACTGAAAGCTGTCTCGCAGACATCTGACCCAAACAGAGACATTTCCACACTGATGTCTGAGTGACAGAATATCGTCCTGTGTGGGCCGTTGTGATTTATAGGATGGCATTCGATATCAACCCCCTGTGGTCACAcacttctgcacacacacacatgctctcagAACAATGTGACCTTGGGAGTCCATATCacagcatatgtgtgtgtgcttgtgcgagGGTGgagtgtcagagagagagagagagggagggagagaaagagagagcaattCCCCTAATGCAAGCTACAGTAAGAACAAGAGAGATTGAACAAGAGAGACCCCCTCAGTTGAACAATGGAGGAGTTTGGTGACACCAGAGCAAAACAATCATGGACTTAGGATTGAACAACCGCTTGatagttaatgaaaatatttcTTTAGCACAGCCATGATATGGACAGATTTCACGTACGGTATGCAAAACTGTCCCGTCAAAGTAATGATGTGCCTGTATGTTGGAGGTGAAAAGATtgtcaaagaagaaaaaaaacgatGATAGCGAAGACTCTTATGGACTGCGCCAGAGAGGAGAGCATGATGTTGCAAAACTTCGGCAGAAGGGAAAAAAGCAGAGAGGAATGGAGGGAGGGGTGGAAAAGGAGGAAGGTGTGGAGGACGGCAGGAGAAGAGGGAAAGCAAGTCTCTGCATCTCAAGTGCTTAACAGTGACCTTAGAATTTGtgtttctccctctctctctctctctctctctctctctcgttctctctgcATTAAAGTACAATGCTGCATTTCTTTAGAGCGTCCCAGGAAGAACTACTAGAGTGCCTGCAGCCCTGCCTACTTCTTGTTCTTTCCTTCTCCCTCCTTTTTTTTCCAACTTTATGATACATTGATGGAGAAGTATGACTAAGGCCTGAGAGCAGAGGAGAAGTTGCTGGACTTGTATGGGATTCATGTAcaaattatttgctaatttaggaGAGAAGGATTGTGGTTTGAGGGTTCATAAGTTGaacaaagaaactcctGTATTTCATTTCATTAGGCATtgatggtgccatcacagaagtgcatgtttcctttgccaagggcactgataCGACCCCAAACCATGACGGACCCTGACCTACAGTATGGACTTGTTGCTGGTCTGGATGAtctttttcttgttttgtctGGAAGCCCAAAGCGTCTATTTCTtccaaaaatacctgaaatactgatttatctgaccacagtacacactgcttctggacactgttaacatagggatTTCTTGGGCAgggtacagttttaactggcatttgtgaatGTAACTACATATTATAGTACTTGACAAAAGTTTGCCAAAGTAGTTCTGAGCTCATGTGGTTATCACTCATAGATAAATGATGATGcttgatgcagtgctgcctgagggatTGGAGATCACTGTTGTTCAGCTTAGTCTTCGACCTTGTCttttatgcactgaaattcctccagattgtttgaatttttaaattatgttatgcactgttgaaggtgaaatatccaaacgtcttcctatctttctttaaGGAACAAAGAAATTACATcatactttaaatatttgtaaaattttcTCACGTATTTGTTGACAAACTGGTGATTATCAGCCCATCTTTGCTTATCAGAAAAGACTAgtcctttcttggatgctgcttttgtaccaaatcctAGTTACAATCCCCTGTttacatcacctgtttcaaatcacataattatttaaccaatttagcTGATttctagccctaaattgctcctgtcccaactttttttggaatatgttgcaggTCTGAGTGACCGGAAAGAATGTATATTTACAAGGAAAATTAAGTTTAtcagacaaaatataaaaatttttgcattcatattgtctgcaataaaatacaagtcaaagtaaatttagaaatcactaaatttttttttgcattttccatactgtcccaacctttCTGATTTGGTGTTGTAAAGTATATGTAGAAATGTTACGACTCTCTTACTCTCTtaggcaaaaacaaaacaaaacaaaacataactgtacTGAATACAGTATGTTGTTTAGTTTCTTCCCTGAAGATAAATTCTGTGCTTATATTTGATAAGATACTTAAACTTTATTGAATTTACTTTGTCAAGCATTTTTATTCTGATTGAAACCAATAAGCATTCCAAGCCATATTAAACAATACTGAGGAAATTACTAGCCATATATGATCACACAACGTCTTGTAAAAGGTCATGAAGTTAgctgaaaacaaaaacactgacatACAATAACCACCACAAAAGACACTATGGCCCAATACCAATTCCAATTTATACCCCTACGCCTTTCCCTTGGCACTTGAAATTAAGTGTCTATCAGAATTTCAAACATTTTGCTGCGGTTATTCTAACTATTGTTAGAAATATTTTGAGATTTCTTTTAACATTTGTTCGAATATCACAAACCTTAGCACTTTGACaccattataaatgtaataaattggaTACATGTTTGTAGTAAATCCCTATTTTTTTTAGCTGTGGGGATCCCTTTGTTGTTTGCAGCTGATTTATTCAGGAAAATGTCTAATACCCTTTTGTTTGTAGTGTGGTCCggaaaaatctttgtttgaaagggaagggctaaggggtagaattgggattaggcctacAGAGCCCAACCAGATAAAAAAGAAAAGCTATAAACAGACTGATAGCAACCAGATAATTCAGGACAGAAATCATAAACCAGATGGACAGACTGATGAAACAAATATGGAAAGAGAACTTGAAAGGTCTACTGTCAACCACAGTCACATGACCACCAAAACACACCAGCTAGCAATCGGTTTTACCAGAACATGAAGCATGGAGCTCCACCATCCATTAGGCCTCCAGGGCTAACATGACGGGTTAGGGCTGTCTGTTTCAGGATTCAGAGTAAGCAGTTTGTTCACAGGGACGAAACACTAAAATACTGGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018900 lncRNA upstream 145291 12059240 ~ 12362508 (+) False XLOC_008353
TCONS_00018902 lncRNA upstream 150790 12060989 ~ 12357009 (+) True XLOC_008353
TCONS_00018899 lncRNA upstream 379363 12059240 ~ 12128436 (+) False XLOC_008353
TCONS_00018898 lncRNA upstream 386361 12059240 ~ 12121438 (+) False XLOC_008353
TCONS_00018897 lncRNA upstream 390069 12059240 ~ 12117730 (+) False XLOC_008353
TCONS_00018906 lncRNA downstream 94511 12620107 ~ 12621628 (+) True XLOC_008357
TCONS_00018907 lncRNA downstream 475597 13001193 ~ 13091234 (+) False XLOC_008358
TCONS_00018908 lncRNA downstream 475601 13001197 ~ 13136464 (+) False XLOC_008358
TCONS_00018909 lncRNA downstream 475602 13001198 ~ 13001808 (+) False XLOC_008358
TCONS_00018762 lncRNA downstream 475614 13001210 ~ 13090746 (+) True XLOC_008358
TCONS_00016754 mRNA upstream 48464 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016755 mRNA upstream 53070 12436220 ~ 12454729 (+) True XLOC_008355
TCONS_00016753 mRNA upstream 56065 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016752 mRNA upstream 119365 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016751 mRNA upstream 453053 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016759 mRNA downstream 1459283 13984879 ~ 13986761 (+) True XLOC_008362
TCONS_00016761 mRNA downstream 1584056 14109652 ~ 14120431 (+) True XLOC_008364
TCONS_00016762 mRNA downstream 1615449 14141045 ~ 14147349 (+) False XLOC_008365
TCONS_00016764 mRNA downstream 1619750 14145346 ~ 14173592 (+) False XLOC_008365
TCONS_00016765 mRNA downstream 1628578 14154174 ~ 14163546 (+) True XLOC_008366
TCONS_00016731 other upstream 942290 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2611813 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 3196321 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 3468635 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3775933 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 999278 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1432126 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 2868646 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 3993371 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4304166 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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